RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 MOXD2PA6NHM9 499 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 C3orf80F5H4A9 247 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 NDUFV2P19404 249 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 LRRFIP1Q32MZ4 808 aaKnown RBP8.8□□□□□ -1
ZNF540-206ENST00000589117 TYW1BQ6NUM6 668 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 TOM1L2Q6ZVM7 507 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 USP48Q86UV5 1035 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 ZSCAN30Q86W11 494 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 CABLES1Q8TDN4 633 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 CHMP4CQ96CF2 233 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 L3MBTL3Q96JM7 780 aaPredicted RBP8.8□□□□□ -1
ZNF540-206ENST00000589117 TSPY26PQ9H489 355 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 PRDM11Q9NQV5 511 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 RFX7Q2KHR2 1363 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 F13A1P00488 732 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 TSGA10IPQ3SY00 556 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 TNNI3KQ59H18 835 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 TTC13Q8NBP0 860 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 FAM227BQ96M60 508 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 FAM198AQ9UFP1 575 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 FPGT-TNNI3KV9GXZ4 949 aa8.8□□□□□ -1
ZNF540-206ENST00000589117 MEGF6O75095 1541 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 MRC1P22897 1456 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 CRYBG1Q9Y4K1 1723 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 SLC27A2O14975 620 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 GPR37L1O60883 481 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 IGSF3O75054 1194 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 GJB2P29033 226 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 PTPN12Q05209 780 aaKnown RBP8.79□□□□□ -1
ZNF540-206ENST00000589117 TMEM259Q4ZIN3 620 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 C6orf132Q5T0Z8 1188 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 CCDC183Q5T5S1 534 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 CCDC83Q8IWF9 413 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 DDX17Q92841 729 aaKnown RBP8.79□□□□□ -1
ZNF540-206ENST00000589117 FBXW7Q969H0 707 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 RBSNQ9H1K0 784 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 CWC25Q9NXE8 425 aaPredicted RBP8.79□□□□□ -1
ZNF540-206ENST00000589117 RBM27Q9P2N5 1060 aaKnown RBP8.79□□□□□ -1
ZNF540-206ENST00000589117 RGPD5Q99666 1765 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 WDR17Q8IZU2 1322 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 KDM4FA0A1W2PPD8 638 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 SLC34A2O95436 690 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 HMGB1P09429 215 aaKnown RBP8.79□□□□□ -1
ZNF540-206ENST00000589117 TFCP2Q12800 502 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 LARP1BQ659C4 914 aaKnown RBP8.79□□□□□ -1
ZNF540-206ENST00000589117 LRP10Q7Z4F1 713 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 CCDC191Q8NCU4 936 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 GPR108Q9NPR9 543 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 ATG3Q9NT62 314 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 CHMP3Q9Y3E7 222 aa8.79□□□□□ -1
ZNF540-206ENST00000589117 ATP5J2-PTCD1G3V325 749 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 PTCD1O75127 700 aaKnown RBP8.78□□□□□ -1
ZNF540-206ENST00000589117 AP1G2O75843 785 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 MCM5P33992 734 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 UVSSAQ2YD98 709 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 ADCK5Q3MIX3 580 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 FOXD4L6Q3SYB3 417 aaPredicted RBP8.78□□□□□ -1
ZNF540-206ENST00000589117 MCMDC2Q4G0Z9 681 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 RSBN1LQ6PCB5 846 aaPredicted RBP8.78□□□□□ -1
ZNF540-206ENST00000589117 LMBR1LQ6UX01 489 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 FOXD4L3Q6VB84 417 aaPredicted RBP8.78□□□□□ -1
ZNF540-206ENST00000589117 KLHDC4Q8TBB5 520 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 HAUS7Q99871 368 aa8.78□□□□□ -1
ZNF540-206ENST00000589117 TEX13AQ9BXU3 409 aaPredicted RBP8.78□□□□□ -1
ZNF540-206ENST00000589117 H7C1W4 665 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 IL2RBP14784 551 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 RPS6KB1P23443 525 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 IL15P40933 162 aaPredicted RBP8.77□□□□□ -1
ZNF540-206ENST00000589117 EVA1CP58658 441 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 EPHA10Q5JZY3 1008 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 TLR7Q9NYK1 1049 aaKnown RBP8.77□□□□□ -1
ZNF540-206ENST00000589117 CCDC39Q9UFE4 941 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 KIF3AQ9Y496 699 aa8.77□□□□□ -1
ZNF540-206ENST00000589117 A0A0D9SFI3 127 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 VPS37CA5D8V6 355 aaPredicted RBP8.77□□□□□ -1.01
ZNF540-206ENST00000589117 TAF5LO75529 589 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 RFX5P48382 616 aaPredicted RBP8.77□□□□□ -1.01
ZNF540-206ENST00000589117 KRT85P78386 507 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 FGD1P98174 961 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 ME3Q16798 604 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 USPL1Q5W0Q7 1092 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 PDLIM2Q96JY6 352 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 NAP1L5Q96NT1 182 aaPredicted RBP8.77□□□□□ -1.01
ZNF540-206ENST00000589117 CARD10Q9BWT7 1032 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 DBNLQ9UJU6 430 aaKnown RBP8.77□□□□□ -1.01
ZNF540-206ENST00000589117 RPAP1Q9BWH6 1393 aaPredicted RBP8.77□□□□□ -1.01
ZNF540-206ENST00000589117 MED23Q9ULK4 1368 aa8.77□□□□□ -1.01
ZNF540-206ENST00000589117 GOLGA6L4A6NEF3 574 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 CPA1P15085 419 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 KBTBD3Q8NAB2 608 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 NEUROD6Q96NK8 337 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 NEK1Q96PY6 1258 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 DNAJC2Q99543 621 aaKnown RBP8.76□□□□□ -1.01
ZNF540-206ENST00000589117 CNPY2Q9Y2B0 182 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 PCDHGA4Q9Y5G9 962 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 COL18A1P39060 1754 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 GJD4Q96KN9 370 aaPredicted RBP8.76□□□□□ -1.01
ZNF540-206ENST00000589117 SCAND2PQ9GZW5 306 aaPredicted RBP8.76□□□□□ -1.01
ZNF540-206ENST00000589117 HMX1Q9NP08 348 aaPredicted RBP8.76□□□□□ -1.01
ZNF540-206ENST00000589117 HELLSQ9NRZ9 838 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms