RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 WASHC2AQ641Q2 1341 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 A0A1W2PP64 1363 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 ERVV-2B6SEH9 535 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 ALDH1A1P00352 501 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 EGFRP00533 1210 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 FOSL2P15408 326 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 SYN1P17600 705 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 MTFR1Q15390 333 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 DMRTA1Q5VZB9 504 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 SLC51AQ86UW1 340 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 C7orf61Q8IZ16 206 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 ADAMTS19Q8TE59 1207 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 COL26A1Q96A83 441 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 UHRF1Q96T88 793 aaPredicted RBP5.48□□□□□ -1.53
LIG3-211ENST00000588713 LRFN3Q9BTN0 628 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 UBE2OQ9C0C9 1292 aaKnown RBP5.48□□□□□ -1.53
LIG3-211ENST00000588713 GGA3Q9NZ52 723 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 EDC4Q6P2E9 1401 aaKnown RBP5.48□□□□□ -1.53
LIG3-211ENST00000588713 CDHR2Q9BYE9 1310 aa5.48□□□□□ -1.53
LIG3-211ENST00000588713 TK2O00142 265 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 CYP19A1P11511 503 aaPredicted RBP5.47□□□□□ -1.53
LIG3-211ENST00000588713 ALDH1B1P30837 517 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 MAGEA10P43363 369 aaPredicted RBP5.47□□□□□ -1.53
LIG3-211ENST00000588713 SP3Q02447 781 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 RTL5Q5HYW3 569 aaPredicted RBP5.47□□□□□ -1.53
LIG3-211ENST00000588713 UBE2Q1Q7Z7E8 422 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 NBPF5PQ86XG9 351 aaPredicted RBP5.47□□□□□ -1.53
LIG3-211ENST00000588713 SIN3AQ96ST3 1273 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 ZNRF3Q9ULT6 936 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 TBC1D2BQ9UPU7 963 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 SNED1Q8TER0 1413 aa5.47□□□□□ -1.53
LIG3-211ENST00000588713 ASTN2O75129 1339 aaPredicted RBP5.47□□□□□ -1.53
LIG3-211ENST00000588713 FAM177BA6PVY3 158 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 ANP32AP39687 249 aaKnown RBP5.46□□□□□ -1.54
LIG3-211ENST00000588713 CRHR2Q13324 411 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 TCIRG1Q13488 830 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 FAM109BQ6ICB4 259 aaPredicted RBP5.46□□□□□ -1.54
LIG3-211ENST00000588713 USP38Q8NB14 1042 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 IL27Q8NEV9 243 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 NKX2-3Q8TAU0 364 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 KCNK17Q96T54 332 aa5.46□□□□□ -1.54
LIG3-211ENST00000588713 SCAF8Q9UPN6 1271 aaKnown RBP5.46□□□□□ -1.54
LIG3-211ENST00000588713 A0A087WZG4 1122 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 PRAMEF22A3QJZ6 481 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 HSP90AB1P08238 724 aaKnown RBP5.45□□□□□ -1.54
LIG3-211ENST00000588713 GJA8P48165 433 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 FKBP1BP68106 108 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 TNIP1Q15025 636 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 KIF4BQ2VIQ3 1234 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 TMEM31Q5JXX7 168 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 CC2D2BQ6DHV5 1058 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 NFATC2IPQ8NCF5 419 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 KCTD12Q96CX2 325 aaKnown RBP5.45□□□□□ -1.54
LIG3-211ENST00000588713 NECAB3Q96P71 396 aaPredicted RBP5.45□□□□□ -1.54
LIG3-211ENST00000588713 SLC12A5Q9H2X9 1139 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 RYDENQ9NUL5 291 aaKnown RBP5.45□□□□□ -1.54
LIG3-211ENST00000588713 PIEZO1Q92508 2521 aa5.45□□□□□ -1.54
LIG3-211ENST00000588713 FLT4P35916 1363 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 FAM86C2PA6NEL3 165 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 IGF2BP3O00425 579 aaKnown RBP eCLIP5.44□□□□□ -1.54
LIG3-211ENST00000588713 PPM1GO15355 546 aaPredicted RBP5.44□□□□□ -1.54
LIG3-211ENST00000588713 HRO43593 1189 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 KRT37O76014 449 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 PRKG1Q13976 671 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 ARHGEF6Q15052 776 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 PRAMEF18Q5VWM3 479 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 PPM1EQ8WY54 764 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 RNF208Q9H0X6 261 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 EPHX3Q9H6B9 360 aa5.44□□□□□ -1.54
LIG3-211ENST00000588713 ST20-MTHFSA0A0A6YYL1 179 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 CCL5P13501 91 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 MTHFSP49914 203 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 EIF5P55010 431 aaKnown RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 FOXK2Q01167 660 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 PTPN12Q05209 780 aaKnown RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 SLC39A6Q13433 755 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 ANGEL2Q5VTE6 544 aaKnown RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 SPRYD7Q5W111 196 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 ZNF530Q6P9A1 599 aaPredicted RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 NPM2Q86SE8 214 aaKnown RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 ZNF454Q8N9F8 522 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 OXER1Q8TDS5 423 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 IPO9Q96P70 1041 aaKnown RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 SEMA6BQ9H3T3 888 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 TERF2IPQ9NYB0 399 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 BIN2Q9UBW5 565 aaPredicted RBP5.43□□□□□ -1.54
LIG3-211ENST00000588713 SCN7AQ01118 1682 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 KIF7Q2M1P5 1343 aa5.43□□□□□ -1.54
LIG3-211ENST00000588713 CACNA1GO43497 2377 aa5.42□□□□□ -1.54
LIG3-211ENST00000588713 KLRG2A4D1S0 409 aaPredicted RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 MANSC4A6NHS7 340 aaPredicted RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 YDJCA8MPS7 323 aa5.42□□□□□ -1.54
LIG3-211ENST00000588713 PSMD14O00487 310 aa5.42□□□□□ -1.54
LIG3-211ENST00000588713 GJB1P08034 283 aa5.42□□□□□ -1.54
LIG3-211ENST00000588713 GTF2E1P29083 439 aaPredicted RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 EIF4G2P78344 907 aaKnown RBP eCLIP5.42□□□□□ -1.54
LIG3-211ENST00000588713 MDM2Q00987 491 aaPredicted RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 U2AF1L4Q8WU68 220 aaKnown RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 RPGRQ92834 1020 aaKnown RBP5.42□□□□□ -1.54
LIG3-211ENST00000588713 ASB2Q96Q27 587 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms