RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 USP17L8P0C7I0 530 aa13.58□□□□□ -0.24
CLIP3-203ENST00000586457 MS4A1P11836 297 aa13.58□□□□□ -0.24
CLIP3-203ENST00000586457 RABL6Q3YEC7 729 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-203ENST00000586457 TBC1D10BQ4KMP7 808 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-203ENST00000586457 CAVIN4Q5BKX8 364 aa13.58□□□□□ -0.24
CLIP3-203ENST00000586457 ZC3H15Q8WU90 426 aaKnown RBP13.58□□□□□ -0.24
CLIP3-203ENST00000586457 DCPSQ96C86 337 aaKnown RBP13.58□□□□□ -0.24
CLIP3-203ENST00000586457 KAZALD1Q96I82 304 aa13.58□□□□□ -0.24
CLIP3-203ENST00000586457 HDAC9Q9UKV0 1011 aa13.58□□□□□ -0.24
CLIP3-203ENST00000586457 COL4A1P02462 1669 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 WTIPA6NIX2 430 aaPredicted RBP13.57□□□□□ -0.24
CLIP3-203ENST00000586457 TRIM27P14373 513 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 UBE4AQ14139 1066 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 STRIP1Q5VSL9 837 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 SAMD7Q7Z3H4 446 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 ANKRD44Q8N8A2 993 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 LRRFIP2Q9Y608 721 aaKnown RBP13.57□□□□□ -0.24
CLIP3-203ENST00000586457 MYO3BQ8WXR4 1341 aa13.57□□□□□ -0.24
CLIP3-203ENST00000586457 TMEM88BA6NKF7 163 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 GNAI2P04899 355 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 GTF2IP78347 998 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 HTRA3P83110 453 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 CDC37L1Q7L3B6 337 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 PUS3Q9BZE2 481 aaKnown RBP13.56□□□□□ -0.24
CLIP3-203ENST00000586457 CD209Q9NNX6 404 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 CREBZFQ9NS37 354 aa13.56□□□□□ -0.24
CLIP3-203ENST00000586457 ITGBL1O95965 494 aaPredicted RBP13.55□□□□□ -0.24
CLIP3-203ENST00000586457 IFIT1P09914 478 aaKnown RBP13.55□□□□□ -0.24
CLIP3-203ENST00000586457 HIBADHP31937 336 aaKnown RBP13.55□□□□□ -0.24
CLIP3-203ENST00000586457 MMP14P50281 582 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 KIF4BQ2VIQ3 1234 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 TXNRD3Q86VQ6 643 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 ITPRIPQ8IWB1 547 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 DZIP1LQ8IYY4 767 aaKnown RBP13.55□□□□□ -0.24
CLIP3-203ENST00000586457 KLHDC4Q8TBB5 520 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 MEIS3Q99687 375 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 SIL1Q9H173 461 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 ABT1Q9ULW3 272 aaKnown RBP13.55□□□□□ -0.24
CLIP3-203ENST00000586457 RIPOR2Q9Y4F9 1068 aa13.55□□□□□ -0.24
CLIP3-203ENST00000586457 SNAP23O00161 211 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 EYA2O00167 538 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 SRGAP3O43295 1099 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 PDE8BO95263 885 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 KLRK1P26718 216 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 LRRC24Q50LG9 513 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 C15orf52Q6ZUT6 534 aaKnown RBP13.54□□□□□ -0.24
CLIP3-203ENST00000586457 SULF1Q8IWU6 871 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 ZNF408Q9H9D4 720 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 MYOZ2Q9NPC6 264 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 CEP126Q9P2H0 1117 aa13.54□□□□□ -0.24
CLIP3-203ENST00000586457 LTBP1Q14766 1721 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 SHTN1A0MZ66 631 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 SLC5A1P13866 664 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 PUM3Q15397 648 aaKnown RBP13.53□□□□□ -0.24
CLIP3-203ENST00000586457 DACT2Q5SW24 774 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 PAXIP1Q6ZW49 1069 aaPredicted RBP13.53□□□□□ -0.24
CLIP3-203ENST00000586457 USP48Q86UV5 1035 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 TMEM57Q8N5G2 664 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.53□□□□□ -0.24
CLIP3-203ENST00000586457 TRPM4Q8TD43 1214 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 KLRG1Q96E93 195 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 FBXO3Q9UK99 471 aa13.53□□□□□ -0.24
CLIP3-203ENST00000586457 SASH1O94885 1247 aa13.52□□□□□ -0.25
CLIP3-203ENST00000586457 IL15P40933 162 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-203ENST00000586457 GYG1P46976 350 aa13.52□□□□□ -0.25
CLIP3-203ENST00000586457 RBM5P52756 815 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLIP3-203ENST00000586457 HIRAP54198 1017 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-203ENST00000586457 SCARF1Q14162 830 aa13.52□□□□□ -0.25
CLIP3-203ENST00000586457 KRT26Q7Z3Y9 468 aa13.52□□□□□ -0.25
CLIP3-203ENST00000586457 KIAA0825Q8IV33 1275 aa13.52□□□□□ -0.25
CLIP3-203ENST00000586457 PASKQ96RG2 1323 aa13.52□□□□□ -0.25
CLIP3-203ENST00000586457 F8W031 263 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 MYO1BO43795 1136 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 CIAO1O76071 339 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 CELF2O95319 508 aaKnown RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 IL1R1P14778 569 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 ZNF280AP59817 542 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 PTPN12Q05209 780 aaKnown RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 G3BP1Q13283 466 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 DEFB115Q30KQ5 88 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 DNAJC5GQ8N7S2 189 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 MXD3Q9BW11 206 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 GLIS2Q9BZE0 524 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 CHMP4BQ9H444 224 aaKnown RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 GNL3LQ9NVN8 582 aaKnown RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 MKRN1Q9UHC7 482 aaKnown RBP13.51□□□□□ -0.25
CLIP3-203ENST00000586457 PGAP2Q9UHJ9 254 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 RCAN3Q9UKA8 241 aa13.51□□□□□ -0.25
CLIP3-203ENST00000586457 TRAF5O00463 557 aa13.5□□□□□ -0.25
CLIP3-203ENST00000586457 OS9Q13438 667 aaPredicted RBP13.5□□□□□ -0.25
CLIP3-203ENST00000586457 DLGAP5Q15398 846 aa13.5□□□□□ -0.25
CLIP3-203ENST00000586457 LPIN2Q92539 896 aa13.5□□□□□ -0.25
CLIP3-203ENST00000586457 FAM84BQ96KN1 310 aaPredicted RBP13.5□□□□□ -0.25
CLIP3-203ENST00000586457 YTHDC1Q96MU7 727 aaKnown RBP13.5□□□□□ -0.25
CLIP3-203ENST00000586457 TNNQ9UQP3 1299 aa13.5□□□□□ -0.25
CLIP3-203ENST00000586457 JAG2Q9Y219 1238 aa13.5□□□□□ -0.25
CLIP3-203ENST00000586457 AKAP2Q9Y2D5 859 aa13.5□□□□□ -0.25
CLIP3-203ENST00000586457 CHAF1AQ13111 956 aaPredicted RBP13.49□□□□□ -0.25
CLIP3-203ENST00000586457 GRM1Q13255 1194 aa13.49□□□□□ -0.25
CLIP3-203ENST00000586457 ATP2B3Q16720 1220 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms