RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 GPR162Q16538 588 aa10.14□□□□□ -0.79
SMAD4-204ENST00000586253 SLC4A10Q6U841 1118 aa10.14□□□□□ -0.79
SMAD4-204ENST00000586253 RPGRQ92834 1020 aaKnown RBP10.14□□□□□ -0.79
SMAD4-204ENST00000586253 ZNF622Q969S3 477 aaKnown RBP eCLIP10.14□□□□□ -0.79
SMAD4-204ENST00000586253 YTHDC1Q96MU7 727 aaKnown RBP10.14□□□□□ -0.79
SMAD4-204ENST00000586253 SRCIN1Q9C0H9 1055 aa10.14□□□□□ -0.79
SMAD4-204ENST00000586253 MYH3P11055 1940 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 GRM8O00222 908 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 DPYSL4O14531 572 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 PDE8AO60658 829 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 BCAR3O75815 825 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 YBX3P16989 372 aaKnown RBP eCLIP10.13□□□□□ -0.79
SMAD4-204ENST00000586253 CCT4P50991 539 aaKnown RBP10.13□□□□□ -0.79
SMAD4-204ENST00000586253 C6orf132Q5T0Z8 1188 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 SYNE4Q8N205 404 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 RBM17Q96I25 401 aaKnown RBP10.13□□□□□ -0.79
SMAD4-204ENST00000586253 CRAMP1Q96RY5 1269 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 PLA2G12BQ9BX93 195 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 BCS1LQ9Y276 419 aa10.13□□□□□ -0.79
SMAD4-204ENST00000586253 UTYO14607 1347 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 ABCC4O15439 1325 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 ITGBL1O95965 494 aaPredicted RBP10.12□□□□□ -0.79
SMAD4-204ENST00000586253 TRIM27P14373 513 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 CASP7P55210 303 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 RTL5Q5HYW3 569 aaPredicted RBP10.12□□□□□ -0.79
SMAD4-204ENST00000586253 ZKSCAN2Q63HK3 967 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 PRPF40BQ6NWY9 871 aaKnown RBP10.12□□□□□ -0.79
SMAD4-204ENST00000586253 ATF7IPQ6VMQ6 1270 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 UBE3BQ7Z3V4 1068 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 LAPTM4BQ86VI4 370 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 KIAA1468Q9P260 1216 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 RCAN3Q9UKA8 241 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 SLX4Q8IY92 1834 aa10.12□□□□□ -0.79
SMAD4-204ENST00000586253 CACNA1SQ13698 1873 aa10.11□□□□□ -0.79
SMAD4-204ENST00000586253 CTSWP56202 376 aa10.11□□□□□ -0.79
SMAD4-204ENST00000586253 CCDC152Q4G0S7 254 aa10.11□□□□□ -0.79
SMAD4-204ENST00000586253 SOGA3Q5TF21 947 aa10.11□□□□□ -0.79
SMAD4-204ENST00000586253 DDX46Q7L014 1031 aaKnown RBP10.11□□□□□ -0.79
SMAD4-204ENST00000586253 C9orf78Q9NZ63 289 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-204ENST00000586253 RTL9Q8NET4 1388 aa10.11□□□□□ -0.79
SMAD4-204ENST00000586253 SOWAHBA6NEL2 793 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 BBOX1O75936 387 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 BCAMP50895 628 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 GRIPAP1Q4V328 841 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 INTS3Q68E01 1043 aaKnown RBP10.1□□□□□ -0.79
SMAD4-204ENST00000586253 CC2D2BQ6DHV5 1058 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 TMC4Q7Z404 712 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 C7orf43Q8WVR3 580 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 FRAT1Q92837 279 aaPredicted RBP10.1□□□□□ -0.79
SMAD4-204ENST00000586253 EPAS1Q99814 870 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 WWC3Q9ULE0 1092 aa10.1□□□□□ -0.79
SMAD4-204ENST00000586253 CHD4Q14839 1912 aa10.09□□□□□ -0.79
SMAD4-204ENST00000586253 FER1L6Q2WGJ9 1857 aa10.09□□□□□ -0.79
SMAD4-204ENST00000586253 MS4A1P11836 297 aa10.09□□□□□ -0.79
SMAD4-204ENST00000586253 GRAPQ13588 217 aa10.09□□□□□ -0.79
SMAD4-204ENST00000586253 TTLL11Q8NHH1 800 aa10.09□□□□□ -0.79
SMAD4-204ENST00000586253 GRAPLQ8TC17 118 aaPredicted RBP10.09□□□□□ -0.79
SMAD4-204ENST00000586253 JARID2Q92833 1246 aaPredicted RBP10.09□□□□□ -0.79
SMAD4-204ENST00000586253 ZFRQ96KR1 1074 aaKnown RBP10.09□□□□□ -0.79
SMAD4-204ENST00000586253 USP44Q9H0E7 712 aa10.09□□□□□ -0.79
SMAD4-204ENST00000586253 PPEF1O14829 653 aaPredicted RBP10.08□□□□□ -0.8
SMAD4-204ENST00000586253 C21orf2O43822 256 aa10.08□□□□□ -0.8
SMAD4-204ENST00000586253 CSF1RP07333 972 aa10.08□□□□□ -0.8
SMAD4-204ENST00000586253 NBPF7P0C2Y1 421 aaPredicted RBP10.08□□□□□ -0.8
SMAD4-204ENST00000586253 FTSJ3Q8IY81 847 aaKnown RBP10.08□□□□□ -0.8
SMAD4-204ENST00000586253 ANKK1Q8NFD2 765 aa10.08□□□□□ -0.8
SMAD4-204ENST00000586253 HDAC5Q9UQL6 1122 aa10.08□□□□□ -0.8
SMAD4-204ENST00000586253 LTBP3Q9NS15 1303 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 SNED1Q8TER0 1413 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 LRRC37AA6NMS7 1700 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 TRIM6-TRIM34B2RNG4 842 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 FOXO4P98177 505 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 CCDC93Q567U6 631 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.07□□□□□ -0.8
SMAD4-204ENST00000586253 SP8Q8IXZ3 490 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 DZIP1LQ8IYY4 767 aaKnown RBP10.07□□□□□ -0.8
SMAD4-204ENST00000586253 RTKN2Q8IZC4 609 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.07□□□□□ -0.8
SMAD4-204ENST00000586253 CDC5LQ99459 802 aaKnown RBP10.07□□□□□ -0.8
SMAD4-204ENST00000586253 TMX4Q9H1E5 349 aaPredicted RBP10.07□□□□□ -0.8
SMAD4-204ENST00000586253 ATP6V0A2Q9Y487 856 aa10.07□□□□□ -0.8
SMAD4-204ENST00000586253 TAF1P21675 1872 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 GNAI3P08754 354 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 RPS8P62241 208 aaKnown RBP10.06□□□□□ -0.8
SMAD4-204ENST00000586253 RABL6Q3YEC7 729 aaPredicted RBP10.06□□□□□ -0.8
SMAD4-204ENST00000586253 ARHGAP27Q6ZUM4 889 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 TMEM57Q8N5G2 664 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 CELF1Q92879 486 aaKnown RBP10.06□□□□□ -0.8
SMAD4-204ENST00000586253 CLUAP1Q96AJ1 413 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 KAZALD1Q96I82 304 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 SUCLG2Q96I99 432 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 GREM2Q9H772 168 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 SEC31BQ9NQW1 1179 aa10.06□□□□□ -0.8
SMAD4-204ENST00000586253 SBF1O95248 1867 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 NFKBIEO00221 500 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 UBTFL1P0CB47 393 aaPredicted RBP10.05□□□□□ -0.8
SMAD4-204ENST00000586253 ITGA6P23229 1130 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 IFIT5Q13325 482 aaKnown RBP10.05□□□□□ -0.8
SMAD4-204ENST00000586253 FAM161AQ3B820 660 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 EPHA10Q5JZY3 1008 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms