RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 PSAPP07602 524 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 ZAP70P43403 619 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 EIF1AXP47813 144 aaKnown RBP7.24□□□□□ -1.25
SS18-223ENST00000583595 NRLP54845 237 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 TRIP4Q15650 581 aaPredicted RBP7.24□□□□□ -1.25
SS18-223ENST00000583595 GRIK4Q16099 956 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 DMRTC2Q8IXT2 367 aaPredicted RBP7.24□□□□□ -1.25
SS18-223ENST00000583595 DHX38Q92620 1227 aaKnown RBP7.24□□□□□ -1.25
SS18-223ENST00000583595 LPIN3Q9BQK8 851 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 FAM13BQ9NYF5 915 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 FRRS1LQ9P0K9 344 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 PRKAG2Q9UGJ0 569 aa7.24□□□□□ -1.25
SS18-223ENST00000583595 UBAP1LF5GYI3 381 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 SORBS3O60504 671 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 IGHA2P01877 340 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 FURINP09958 794 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 GATA4P43694 442 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 PLAURQ03405 335 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 TMC4Q7Z404 712 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 NLRP13Q86W25 1043 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 ABTB2Q8N961 1025 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 GPR152Q8TDT2 470 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 RNF34Q969K3 372 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 CAPN10Q9HC96 672 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 MRS2Q9HD23 443 aa7.23□□□□□ -1.25
SS18-223ENST00000583595 LOC102724428A0A0B4J2F2 783 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 J3QW42 95 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 ADAM23O75077 832 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 PRPF40AO75400 957 aaKnown RBP7.22□□□□□ -1.25
SS18-223ENST00000583595 EIF2AK2P19525 551 aaKnown RBP7.22□□□□□ -1.25
SS18-223ENST00000583595 TNNI2P48788 182 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 SIK1P57059 783 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 RAC1P63000 192 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 DAB2P98082 770 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 FANCCQ00597 558 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 NACC1Q96RE7 527 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 CITED4Q96RK1 184 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 TINF2Q9BSI4 451 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 LNPKQ9C0E8 428 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 NIF3L1Q9GZT8 377 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 SMG9Q9H0W8 520 aaKnown RBP7.22□□□□□ -1.25
SS18-223ENST00000583595 ACBD3Q9H3P7 528 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 VTI1BQ9UEU0 232 aa7.22□□□□□ -1.25
SS18-223ENST00000583595 K7ELQ4 463 aaPredicted RBP7.21□□□□□ -1.26
SS18-223ENST00000583595 PSMD2Q13200 908 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 DOC2BQ14184 412 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 GRIK5Q16478 980 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 MSL1Q68DK7 614 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 ZNF662Q6ZS27 426 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 ILDR2Q71H61 639 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 TTC9Q92623 222 aa7.21□□□□□ -1.26
SS18-223ENST00000583595 NSUN5Q96P11 429 aaKnown RBP7.21□□□□□ -1.26
SS18-223ENST00000583595 FNDC3AQ9Y2H6 1198 aaKnown RBP7.21□□□□□ -1.26
SS18-223ENST00000583595 GPR182O15218 404 aa7.2□□□□□ -1.26
SS18-223ENST00000583595 ELNP15502 786 aa7.2□□□□□ -1.26
SS18-223ENST00000583595 GTF2F1P35269 517 aaKnown RBP eCLIP7.2□□□□□ -1.26
SS18-223ENST00000583595 SOX18P35713 384 aa7.2□□□□□ -1.26
SS18-223ENST00000583595 TGIF2Q9GZN2 237 aa7.2□□□□□ -1.26
SS18-223ENST00000583595 ANKRD62A6NC57 917 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 GHRHP01286 108 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 HOXD8P13378 290 aaPredicted RBP7.19□□□□□ -1.26
SS18-223ENST00000583595 SELPP16109 830 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 ATP2B1P20020 1258 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 ATCAYQ86WG3 371 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 WFDC8Q8IUA0 241 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 SLC43A3Q8NBI5 491 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 PLD4Q96BZ4 506 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 DMRTB1Q96MA1 342 aa7.19□□□□□ -1.26
SS18-223ENST00000583595 C9orf172C9J069 976 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 ZNF76P36508 570 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 TTC39BQ5VTQ0 682 aaPredicted RBP7.18□□□□□ -1.26
SS18-223ENST00000583595 ALKBH2Q6NS38 261 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 SHISA2Q6UWI4 295 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 FMR1NBQ8N0W7 255 aaPredicted RBP7.18□□□□□ -1.26
SS18-223ENST00000583595 OR13H1Q8NG92 308 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 FAM129BQ96TA1 746 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 CCSER2Q9H7U1 834 aa7.18□□□□□ -1.26
SS18-223ENST00000583595 METTL5Q9NRN9 209 aaKnown RBP7.18□□□□□ -1.26
SS18-223ENST00000583595 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.18□□□□□ -1.26
SS18-223ENST00000583595 DNAJA1P31689 397 aaKnown RBP7.17□□□□□ -1.26
SS18-223ENST00000583595 FGD1P98174 961 aa7.17□□□□□ -1.26
SS18-223ENST00000583595 CCDC144BQ3MJ40 725 aa7.17□□□□□ -1.26
SS18-223ENST00000583595 DTWD1Q8N5C7 304 aa7.17□□□□□ -1.26
SS18-223ENST00000583595 LENG1Q96BZ8 264 aaPredicted RBP7.17□□□□□ -1.26
SS18-223ENST00000583595 NUDT16Q96DE0 195 aaKnown RBP7.17□□□□□ -1.26
SS18-223ENST00000583595 CHMP4AQ9BY43 222 aa7.17□□□□□ -1.26
SS18-223ENST00000583595 RBSNQ9H1K0 784 aa7.17□□□□□ -1.26
SS18-223ENST00000583595 DNM1Q05193 864 aaKnown RBP7.16□□□□□ -1.26
SS18-223ENST00000583595 HYAL2Q12891 473 aa7.16□□□□□ -1.26
SS18-223ENST00000583595 PDE3BQ13370 1112 aa7.16□□□□□ -1.26
SS18-223ENST00000583595 COL13A1Q5TAT6 717 aaPredicted RBP7.16□□□□□ -1.26
SS18-223ENST00000583595 GDF6Q6KF10 455 aaPredicted RBP7.16□□□□□ -1.26
SS18-223ENST00000583595 NOP9Q86U38 636 aaKnown RBP7.16□□□□□ -1.26
SS18-223ENST00000583595 FBXO11Q86XK2 927 aa7.16□□□□□ -1.26
SS18-223ENST00000583595 EDEM1Q92611 657 aa7.16□□□□□ -1.26
SS18-223ENST00000583595 ABI2Q9NYB9 513 aaPredicted RBP7.16□□□□□ -1.26
SS18-223ENST00000583595 POLIQ9UNA4 740 aa7.16□□□□□ -1.26
SS18-223ENST00000583595 PNMA6FA0A0J9YX94 578 aa7.15□□□□□ -1.26
SS18-223ENST00000583595 NCLP19338 710 aaKnown RBP7.15□□□□□ -1.26
SS18-223ENST00000583595 ATP2B2Q01814 1243 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms