RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 OSMRQ99650 979 aa11.46□□□□□ -0.57
SS18-214ENST00000580003 PDE2AO00408 941 aaPredicted RBP11.45□□□□□ -0.58
SS18-214ENST00000580003 SPATA31C1P0DKV0 1188 aa11.45□□□□□ -0.58
SS18-214ENST00000580003 PTPRAP18433 802 aa11.45□□□□□ -0.58
SS18-214ENST00000580003 USPL1Q5W0Q7 1092 aa11.45□□□□□ -0.58
SS18-214ENST00000580003 CSRNP1Q96S65 589 aa11.45□□□□□ -0.58
SS18-214ENST00000580003 TREHO43280 583 aa11.44□□□□□ -0.58
SS18-214ENST00000580003 POP1Q99575 1024 aaKnown RBP11.44□□□□□ -0.58
SS18-214ENST00000580003 ZKSCAN3Q9BRR0 538 aa11.44□□□□□ -0.58
SS18-214ENST00000580003 MUC3BQ9H195 1237 aa11.44□□□□□ -0.58
SS18-214ENST00000580003 A0A0A0MRY4 1105 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 FAM229AH3BQW9 127 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 TRPA1O75762 1119 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 CDC27P30260 824 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 DSC3Q14574 896 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 DTWD1Q8N5C7 304 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 TMEM102Q8N9M5 508 aaPredicted RBP11.43□□□□□ -0.58
SS18-214ENST00000580003 LATS2Q9NRM7 1088 aa11.43□□□□□ -0.58
SS18-214ENST00000580003 NFKBIEO00221 500 aa11.42□□□□□ -0.58
SS18-214ENST00000580003 BAG6P46379 1132 aa11.42□□□□□ -0.58
SS18-214ENST00000580003 PPME1Q9Y570 386 aa11.42□□□□□ -0.58
SS18-214ENST00000580003 PEAR1Q5VY43 1037 aaPredicted RBP11.41□□□□□ -0.58
SS18-214ENST00000580003 CCDC74AQ96AQ1 378 aa11.41□□□□□ -0.58
SS18-214ENST00000580003 APBA3O96018 575 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 CABP4P57796 275 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 ILDR2Q71H61 639 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 FMR1NBQ8N0W7 255 aaPredicted RBP11.4□□□□□ -0.58
SS18-214ENST00000580003 NXPE3Q969Y0 559 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 HHIPQ96QV1 700 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 ADAM19Q9H013 955 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 NPHS2Q9NP85 383 aa11.4□□□□□ -0.58
SS18-214ENST00000580003 PNMA6FA0A0J9YX94 578 aa11.39□□□□□ -0.59
SS18-214ENST00000580003 A0A1W2PP55 124 aa11.39□□□□□ -0.59
SS18-214ENST00000580003 ELNP15502 786 aa11.39□□□□□ -0.59
SS18-214ENST00000580003 MAPK8P45983 427 aa11.39□□□□□ -0.59
SS18-214ENST00000580003 FAM117BQ6P1L5 589 aa11.39□□□□□ -0.59
SS18-214ENST00000580003 KRBA1A5PL33 1030 aa11.38□□□□□ -0.59
SS18-214ENST00000580003 GADD45BO75293 160 aaPredicted RBP11.38□□□□□ -0.59
SS18-214ENST00000580003 CCDC27Q2M243 656 aa11.38□□□□□ -0.59
SS18-214ENST00000580003 MAP4K3Q8IVH8 894 aa11.38□□□□□ -0.59
SS18-214ENST00000580003 ASAP3Q8TDY4 903 aa11.38□□□□□ -0.59
SS18-214ENST00000580003 NACC1Q96RE7 527 aa11.38□□□□□ -0.59
SS18-214ENST00000580003 LIN7BQ9HAP6 207 aa11.38□□□□□ -0.59
SS18-214ENST00000580003 SRA1Q9HD15 236 aaKnown RBP11.38□□□□□ -0.59
SS18-214ENST00000580003 SH2B1Q9NRF2 756 aaPredicted RBP11.38□□□□□ -0.59
SS18-214ENST00000580003 LINC01387J3KSC0 135 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 CDC25BP30305 580 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 FMR1Q06787 632 aaKnown RBP eCLIP11.37□□□□□ -0.59
SS18-214ENST00000580003 ENOX2Q16206 610 aaKnown RBP11.37□□□□□ -0.59
SS18-214ENST00000580003 KIAA0319Q5VV43 1072 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 FBXO11Q86XK2 927 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 DCAF11Q8TEB1 546 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 BSNDQ8WZ55 320 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 BHLHE41Q9C0J9 482 aaPredicted RBP11.37□□□□□ -0.59
SS18-214ENST00000580003 EHD4Q9H223 541 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 NLRP2Q9NX02 1062 aa11.37□□□□□ -0.59
SS18-214ENST00000580003 GRIK4Q16099 956 aa11.36□□□□□ -0.59
SS18-214ENST00000580003 ADAMTSL4Q6UY14 1074 aa11.36□□□□□ -0.59
SS18-214ENST00000580003 EPHA1P21709 976 aa11.35□□□□□ -0.59
SS18-214ENST00000580003 ATP2B2Q01814 1243 aa11.35□□□□□ -0.59
SS18-214ENST00000580003 TXNDC11Q6PKC3 985 aa11.35□□□□□ -0.59
SS18-214ENST00000580003 ANKRD33BA6NCL7 494 aa11.34□□□□□ -0.59
SS18-214ENST00000580003 H3BRJ5 948 aa11.34□□□□□ -0.59
SS18-214ENST00000580003 DEAF1O75398 565 aaPredicted RBP11.34□□□□□ -0.59
SS18-214ENST00000580003 CCNJLQ8IV13 435 aa11.34□□□□□ -0.59
SS18-214ENST00000580003 EPS8L3Q8TE67 593 aaKnown RBP11.34□□□□□ -0.59
SS18-214ENST00000580003 SOX13Q9UN79 622 aa11.34□□□□□ -0.59
SS18-214ENST00000580003 SETDB1Q15047 1291 aa11.33□□□□□ -0.6
SS18-214ENST00000580003 PLA2G4EQ3MJ16 856 aa11.33□□□□□ -0.6
SS18-214ENST00000580003 TCF12Q99081 682 aa11.33□□□□□ -0.6
SS18-214ENST00000580003 TRAK1Q9UPV9 953 aa11.33□□□□□ -0.6
SS18-214ENST00000580003 METTL12A8MUP2 240 aa11.32□□□□□ -0.6
SS18-214ENST00000580003 C9orf172C9J069 976 aa11.32□□□□□ -0.6
SS18-214ENST00000580003 ALG1LQ6GMV1 187 aa11.32□□□□□ -0.6
SS18-214ENST00000580003 FBF1Q8TES7 1133 aa11.32□□□□□ -0.6
SS18-214ENST00000580003 A0A096LPE4 126 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 A0A1W2PPZ6 126 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 C1QTNF9BB2RNN3 333 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 FSCN2O14926 492 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 P4HBP07237 508 aaKnown RBP11.31□□□□□ -0.6
SS18-214ENST00000580003 PIP4K2BP78356 416 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 WNT8BQ93098 351 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 SEC31BQ9NQW1 1179 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 PPP4R2Q9NY27 417 aa11.31□□□□□ -0.6
SS18-214ENST00000580003 DLL1O00548 723 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 ARL4DP49703 201 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 NRG1Q02297 640 aaPredicted RBP11.3□□□□□ -0.6
SS18-214ENST00000580003 IKBKEQ14164 716 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 COL19A1Q14993 1142 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 TMCO4Q5TGY1 634 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 IGF2-ASQ6U949 168 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 CD163Q86VB7 1156 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 KLHL23Q8NBE8 558 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 CARD10Q9BWT7 1032 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 USP21Q9UK80 565 aa11.3□□□□□ -0.6
SS18-214ENST00000580003 LDHBP07195 334 aaKnown RBP11.29□□□□□ -0.6
SS18-214ENST00000580003 SELPP16109 830 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 CHRNA4P43681 627 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 GRIA4P48058 902 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 SPRED3Q2MJR0 410 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms