RNA–Protein interactions for RNA: ENST00000579605.5

CDK5RAP3-213, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 560 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-213ENST00000579605 PODNQ7Z5L7 613 aa17.27■□□□□ 0.36
CDK5RAP3-213ENST00000579605 ZNF333Q96JL9 665 aa17.27■□□□□ 0.36
CDK5RAP3-213ENST00000579605 ISCA1Q9BUE6 129 aa17.27■□□□□ 0.36
CDK5RAP3-213ENST00000579605 RBM27Q9P2N5 1060 aaKnown RBP17.27■□□□□ 0.36
CDK5RAP3-213ENST00000579605 CENPFP49454 3210 aa17.27■□□□□ 0.36
CDK5RAP3-213ENST00000579605 SLC9C1Q4G0N8 1177 aa17.26■□□□□ 0.35
CDK5RAP3-213ENST00000579605 ANKRD13DQ6ZTN6 518 aa17.26■□□□□ 0.35
CDK5RAP3-213ENST00000579605 NBPF11Q86T75 865 aa17.26■□□□□ 0.35
CDK5RAP3-213ENST00000579605 PLBD2Q8NHP8 589 aa17.26■□□□□ 0.35
CDK5RAP3-213ENST00000579605 WNK4Q96J92 1243 aa17.26■□□□□ 0.35
CDK5RAP3-213ENST00000579605 ZNF609O15014 1411 aa17.26■□□□□ 0.35
CDK5RAP3-213ENST00000579605 BRCA2P51587 3418 aa17.25■□□□□ 0.35
CDK5RAP3-213ENST00000579605 OTUD7BQ6GQQ9 843 aa17.25■□□□□ 0.35
CDK5RAP3-213ENST00000579605 DPF3Q92784 378 aa17.25■□□□□ 0.35
CDK5RAP3-213ENST00000579605 PLEKHF1Q96S99 279 aa17.25■□□□□ 0.35
CDK5RAP3-213ENST00000579605 CHPF2Q9P2E5 772 aa17.25■□□□□ 0.35
CDK5RAP3-213ENST00000579605 PTCH2Q9Y6C5 1203 aa17.25■□□□□ 0.35
CDK5RAP3-213ENST00000579605 DDX60Q8IY21 1712 aaKnown RBP17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 KIAA0100Q14667 2235 aaKnown RBP17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 ATP2B4P23634 1241 aa17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 KRT24Q2M2I5 525 aa17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 DACT2Q5SW24 774 aa17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 APOBEC3FQ8IUX4 373 aaKnown RBP17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
CDK5RAP3-213ENST00000579605 XDHP47989 1333 aa17.23■□□□□ 0.35
CDK5RAP3-213ENST00000579605 MAPK8IP3Q9UPT6 1336 aa17.23■□□□□ 0.35
CDK5RAP3-213ENST00000579605 ZBTB48P10074 688 aaPredicted RBP17.23■□□□□ 0.35
CDK5RAP3-213ENST00000579605 CCDC152Q4G0S7 254 aa17.22■□□□□ 0.35
CDK5RAP3-213ENST00000579605 KIAA0825Q8IV33 1275 aa17.22■□□□□ 0.35
CDK5RAP3-213ENST00000579605 PTPN18Q99952 460 aa17.22■□□□□ 0.35
CDK5RAP3-213ENST00000579605 DEFB129Q9H1M3 183 aa17.22■□□□□ 0.35
CDK5RAP3-213ENST00000579605 TRIOBPQ9H2D6 2365 aa17.22■□□□□ 0.35
CDK5RAP3-213ENST00000579605 PPP1R12BO60237 982 aaPredicted RBP17.21■□□□□ 0.35
CDK5RAP3-213ENST00000579605 ANKRD18AQ8IVF6 992 aa17.21■□□□□ 0.35
CDK5RAP3-213ENST00000579605 SH3TC2Q8TF17 1288 aa17.21■□□□□ 0.35
CDK5RAP3-213ENST00000579605 GJA5P36382 358 aa17.2■□□□□ 0.34
CDK5RAP3-213ENST00000579605 RIPK4P57078 832 aa17.2■□□□□ 0.34
CDK5RAP3-213ENST00000579605 ZBTB38Q8NAP3 1195 aaPredicted RBP17.2■□□□□ 0.34
CDK5RAP3-213ENST00000579605 LAS1LQ9Y4W2 734 aaKnown RBP17.2■□□□□ 0.34
CDK5RAP3-213ENST00000579605 ARHGEF6Q15052 776 aa17.19■□□□□ 0.34
CDK5RAP3-213ENST00000579605 HDGFL1Q5TGJ6 251 aa17.19■□□□□ 0.34
CDK5RAP3-213ENST00000579605 STRIP1Q5VSL9 837 aa17.19■□□□□ 0.34
CDK5RAP3-213ENST00000579605 MYO3BQ8WXR4 1341 aa17.19■□□□□ 0.34
CDK5RAP3-213ENST00000579605 ECM2O94769 699 aaPredicted RBP17.18■□□□□ 0.34
CDK5RAP3-213ENST00000579605 TRIM28Q13263 835 aaKnown RBP17.18■□□□□ 0.34
CDK5RAP3-213ENST00000579605 MAP3K11Q16584 847 aa17.18■□□□□ 0.34
CDK5RAP3-213ENST00000579605 TTLL5Q6EMB2 1281 aa17.18■□□□□ 0.34
CDK5RAP3-213ENST00000579605 RBBP6Q7Z6E9 1792 aaKnown RBP17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 DLG5Q8TDM6 1919 aa17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 PDE8AO60658 829 aa17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 HSP90B1P14625 803 aaKnown RBP17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 RIC3Q7Z5B4 369 aa17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 PNNQ9H307 717 aaKnown RBP17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 BABAM1Q9NWV8 329 aa17.17■□□□□ 0.34
CDK5RAP3-213ENST00000579605 IREB2P48200 963 aaKnown RBP17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 GTF2IP78347 998 aa17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 DLGAP5Q15398 846 aa17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 NBPF12Q5TAG4 269 aaPredicted RBP17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 TXNRD3Q86VQ6 643 aa17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 COA1Q9GZY4 146 aa17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 ELP3Q9H9T3 547 aa17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 PCDHAC2Q9Y5I4 1007 aa17.16■□□□□ 0.34
CDK5RAP3-213ENST00000579605 CLRN2A0PK11 232 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 USP2O75604 605 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 CCT4P50991 539 aaKnown RBP17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 TAF1CQ15572 869 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 SUPT20HL1Q3ZLR7 823 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 ZBED3Q96IU2 234 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 MYD88Q99836 296 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 VEZTQ9HBM0 779 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 ZFYVE28Q9HCC9 887 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 DBF4Q9UBU7 674 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 MINPP1Q9UNW1 487 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 MED23Q9ULK4 1368 aa17.15■□□□□ 0.34
CDK5RAP3-213ENST00000579605 TESPA1A2RU30 521 aaPredicted RBP17.14■□□□□ 0.33
CDK5RAP3-213ENST00000579605 OPTNQ96CV9 577 aa17.14■□□□□ 0.33
CDK5RAP3-213ENST00000579605 F8W031 263 aaPredicted RBP17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 MMP14P50281 582 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 MTFR1Q15390 333 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 ANKRD13AQ8IZ07 590 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 LRCH3Q96II8 777 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 CDC5LQ99459 802 aaKnown RBP17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 ARHGAP39Q9C0H5 1083 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 HYPKQ9NX55 129 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 SSC5DA1L4H1 1573 aa17.13■□□□□ 0.33
CDK5RAP3-213ENST00000579605 CEP290O15078 2479 aa17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 SOX1O00570 391 aaPredicted RBP17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 PCCAP05165 728 aaPredicted RBP17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 GOLGA2Q08379 1002 aa17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 BRI3BPQ8WY22 251 aa17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 SHISA4Q96DD7 197 aa17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 A0A0C4DFX4 3053 aa17.12■□□□□ 0.33
CDK5RAP3-213ENST00000579605 CCL15-CCL14A0A0B4J2E2 113 aa17.11■□□□□ 0.33
CDK5RAP3-213ENST00000579605 UNCXA6NJT0 531 aa17.11■□□□□ 0.33
CDK5RAP3-213ENST00000579605 KLRK1P26718 216 aa17.11■□□□□ 0.33
CDK5RAP3-213ENST00000579605 MNX1P50219 401 aaPredicted RBP17.11■□□□□ 0.33
CDK5RAP3-213ENST00000579605 KIF22Q14807 665 aa17.11■□□□□ 0.33
CDK5RAP3-213ENST00000579605 CCL15Q16663 113 aa17.11■□□□□ 0.33
CDK5RAP3-213ENST00000579605 CNKSR2Q8WXI2 1034 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms