RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TXNRD3Q86VQ6 643 aa18.65■□□□□ 0.58
SS18-212ENST00000579061 SHTN1A0MZ66 631 aa18.64■□□□□ 0.57
SS18-212ENST00000579061 TMEM88BA6NKF7 163 aa18.64■□□□□ 0.57
SS18-212ENST00000579061 IPO8O15397 1037 aaKnown RBP18.64■□□□□ 0.57
SS18-212ENST00000579061 HIRAP54198 1017 aaPredicted RBP18.64■□□□□ 0.57
SS18-212ENST00000579061 TRPM4Q8TD43 1214 aa18.64■□□□□ 0.57
SS18-212ENST00000579061 GMLQ99445 158 aa18.64■□□□□ 0.57
SS18-212ENST00000579061 HDAC5Q9UQL6 1122 aa18.64■□□□□ 0.57
SS18-212ENST00000579061 IRS2Q9Y4H2 1338 aa18.64■□□□□ 0.57
SS18-212ENST00000579061 POLR2AP24928 1970 aaKnown RBP18.63■□□□□ 0.57
SS18-212ENST00000579061 TAF5LO75529 589 aa18.63■□□□□ 0.57
SS18-212ENST00000579061 STRIP1Q5VSL9 837 aa18.63■□□□□ 0.57
SS18-212ENST00000579061 INTS3Q68E01 1043 aaKnown RBP18.63■□□□□ 0.57
SS18-212ENST00000579061 JMYQ8N9B5 988 aa18.63■□□□□ 0.57
SS18-212ENST00000579061 HELBQ8NG08 1087 aaPredicted RBP18.63■□□□□ 0.57
SS18-212ENST00000579061 MMP14P50281 582 aa18.62■□□□□ 0.57
SS18-212ENST00000579061 ZNF280AP59817 542 aaPredicted RBP18.62■□□□□ 0.57
SS18-212ENST00000579061 UBE4AQ14139 1066 aa18.62■□□□□ 0.57
SS18-212ENST00000579061 SAMD7Q7Z3H4 446 aa18.62■□□□□ 0.57
SS18-212ENST00000579061 RIPOR2Q9Y4F9 1068 aa18.62■□□□□ 0.57
SS18-212ENST00000579061 MROH5Q6ZUA9 1318 aa18.62■□□□□ 0.57
SS18-212ENST00000579061 MYO3BQ8WXR4 1341 aa18.62■□□□□ 0.57
SS18-212ENST00000579061 UBTFL1P0CB47 393 aaPredicted RBP18.61■□□□□ 0.57
SS18-212ENST00000579061 KLRK1P26718 216 aa18.61■□□□□ 0.57
SS18-212ENST00000579061 DACT2Q5SW24 774 aa18.61■□□□□ 0.57
SS18-212ENST00000579061 CD209Q9NNX6 404 aa18.61■□□□□ 0.57
SS18-212ENST00000579061 SNAP23O00161 211 aa18.6■□□□□ 0.57
SS18-212ENST00000579061 BCAR3O75815 825 aa18.6■□□□□ 0.57
SS18-212ENST00000579061 TBC1D10BQ4KMP7 808 aaPredicted RBP18.6■□□□□ 0.57
SS18-212ENST00000579061 ATF7IPQ6VMQ6 1270 aa18.6■□□□□ 0.57
SS18-212ENST00000579061 CDC37L1Q7L3B6 337 aa18.6■□□□□ 0.57
SS18-212ENST00000579061 ZNF804AQ7Z570 1209 aa18.6■□□□□ 0.57
SS18-212ENST00000579061 PUS3Q9BZE2 481 aaKnown RBP18.6■□□□□ 0.57
SS18-212ENST00000579061 PLIN1O60240 522 aa18.59■□□□□ 0.57
SS18-212ENST00000579061 USP17L8P0C7I0 530 aa18.59■□□□□ 0.57
SS18-212ENST00000579061 TRIM27P14373 513 aa18.59■□□□□ 0.57
SS18-212ENST00000579061 KIF4BQ2VIQ3 1234 aa18.59■□□□□ 0.57
SS18-212ENST00000579061 TTLL5Q6EMB2 1281 aa18.59■□□□□ 0.57
SS18-212ENST00000579061 CNTNAP1P78357 1384 aa18.58■□□□□ 0.57
SS18-212ENST00000579061 EGFRP00533 1210 aa18.58■□□□□ 0.56
SS18-212ENST00000579061 IL1R1P14778 569 aa18.58■□□□□ 0.56
SS18-212ENST00000579061 RFX5P48382 616 aaPredicted RBP18.58■□□□□ 0.56
SS18-212ENST00000579061 GLIS2Q9BZE0 524 aaPredicted RBP18.58■□□□□ 0.56
SS18-212ENST00000579061 FBXO3Q9UK99 471 aa18.58■□□□□ 0.56
SS18-212ENST00000579061 GNAI3P08754 354 aa18.57■□□□□ 0.56
SS18-212ENST00000579061 LRRC24Q50LG9 513 aa18.57■□□□□ 0.56
SS18-212ENST00000579061 RBM26Q5T8P6 1007 aaKnown RBP18.57■□□□□ 0.56
SS18-212ENST00000579061 RASSF10A6NK89 507 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 TRAF5O00463 557 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 GTF2IP78347 998 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 PTPN12Q05209 780 aaKnown RBP18.56■□□□□ 0.56
SS18-212ENST00000579061 METTL24Q5JXM2 366 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 ZKSCAN2Q63HK3 967 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 OGFOD1Q8N543 542 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 FRAT1Q92837 279 aaPredicted RBP18.56■□□□□ 0.56
SS18-212ENST00000579061 FBXW7Q969H0 707 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 DCPSQ96C86 337 aaKnown RBP18.56■□□□□ 0.56
SS18-212ENST00000579061 MEIS3Q99687 375 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 MYOZ2Q9NPC6 264 aa18.56■□□□□ 0.56
SS18-212ENST00000579061 LRRFIP2Q9Y608 721 aaKnown RBP18.56■□□□□ 0.56
SS18-212ENST00000579061 EYA2O00167 538 aa18.55■□□□□ 0.56
SS18-212ENST00000579061 PDE8BO95263 885 aa18.55■□□□□ 0.56
SS18-212ENST00000579061 FKBP1AP62942 108 aaKnown RBP18.55■□□□□ 0.56
SS18-212ENST00000579061 FMR1Q06787 632 aaKnown RBP eCLIP18.55■□□□□ 0.56
SS18-212ENST00000579061 CST9Q5W186 159 aa18.55■□□□□ 0.56
SS18-212ENST00000579061 VGLL2Q8N8G2 317 aa18.55■□□□□ 0.56
SS18-212ENST00000579061 MKRN1Q9UHC7 482 aaKnown RBP18.55■□□□□ 0.56
SS18-212ENST00000579061 DEFB115Q30KQ5 88 aa18.54■□□□□ 0.56
SS18-212ENST00000579061 KRT26Q7Z3Y9 468 aa18.54■□□□□ 0.56
SS18-212ENST00000579061 KLHDC4Q8TBB5 520 aa18.54■□□□□ 0.56
SS18-212ENST00000579061 MXD3Q9BW11 206 aa18.54■□□□□ 0.56
SS18-212ENST00000579061 PITPNM2Q9BZ72 1349 aa18.53■□□□□ 0.56
SS18-212ENST00000579061 SASH1O94885 1247 aa18.53■□□□□ 0.56
SS18-212ENST00000579061 HIBADHP31937 336 aaKnown RBP18.53■□□□□ 0.56
SS18-212ENST00000579061 SCARF1Q14162 830 aa18.53■□□□□ 0.56
SS18-212ENST00000579061 USP48Q86UV5 1035 aa18.53■□□□□ 0.56
SS18-212ENST00000579061 TDRD7Q8NHU6 1098 aaKnown RBP18.53■□□□□ 0.56
SS18-212ENST00000579061 FAM84BQ96KN1 310 aaPredicted RBP18.53■□□□□ 0.56
SS18-212ENST00000579061 HDAC9Q9UKV0 1011 aa18.53■□□□□ 0.56
SS18-212ENST00000579061 FAM205AQ6ZU69 1335 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 CIAO1O76071 339 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 CELF2O95319 508 aaKnown RBP18.52■□□□□ 0.56
SS18-212ENST00000579061 MTX1Q13505 466 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 FBXO33Q7Z6M2 555 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 SULF1Q8IWU6 871 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 GGA3Q9NZ52 723 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 ABT1Q9ULW3 272 aaKnown RBP18.52■□□□□ 0.56
SS18-212ENST00000579061 TNNQ9UQP3 1299 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 TLL2Q9Y6L7 1015 aa18.52■□□□□ 0.56
SS18-212ENST00000579061 PCNTO95613 3336 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 FGFR2P21802 821 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 GYG1P46976 350 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 PUM3Q15397 648 aaKnown RBP18.51■□□□□ 0.55
SS18-212ENST00000579061 ATG9AQ7Z3C6 839 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 KIAA0825Q8IV33 1275 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 CLUAP1Q96AJ1 413 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 COPRSQ9NQ92 184 aa18.51■□□□□ 0.55
SS18-212ENST00000579061 IFIT1P09914 478 aaKnown RBP18.5■□□□□ 0.55
SS18-212ENST00000579061 VEGFBP49765 207 aa18.5■□□□□ 0.55
SS18-212ENST00000579061 CAVIN4Q5BKX8 364 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms