RNA–Protein interactions for RNA: ENST00000578178.5

PPP4R1-208, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 468 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-208	ENST00000578178	TMEM88B	A6NKF7	163 aa		13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	TAF5L	O75529	589 aa		13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	HIRA	P54198	1017 aa	Predicted RBP	13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	C15orf52	Q6ZUT6	534 aa	Known RBP	13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	USP17L1	Q7RTZ2	530 aa		13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	AGBL3	Q8NEM8	1001 aa		13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	HELB	Q8NG08	1087 aa	Predicted RBP	13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	ARHGAP45	Q92619	1136 aa		13.73	□□□□□ -0.21
PPP4R1-208	ENST00000578178	UBTFL1	P0CB47	393 aa	Predicted RBP	13.72	□□□□□ -0.21
PPP4R1-208	ENST00000578178	KIF4B	Q2VIQ3	1234 aa		13.72	□□□□□ -0.21
PPP4R1-208	ENST00000578178	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.72	□□□□□ -0.21
PPP4R1-208	ENST00000578178	SAMD7	Q7Z3H4	446 aa		13.72	□□□□□ -0.21
PPP4R1-208	ENST00000578178	PGAP2	Q9UHJ9	254 aa		13.72	□□□□□ -0.21
PPP4R1-208	ENST00000578178	MYO3B	Q8WXR4	1341 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	SNAP23	O00161	211 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	TRAF5	O00463	557 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	IPO8	O15397	1037 aa	Known RBP	13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	EGFR	P00533	1210 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	ZNF280A	P59817	542 aa	Predicted RBP	13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	DACT2	Q5SW24	774 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	STRIP1	Q5VSL9	837 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	JMY	Q8N9B5	988 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	FBXW7	Q969H0	707 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	GML	Q99445	158 aa		13.71	□□□□□ -0.21
PPP4R1-208	ENST00000578178	CNTNAP1	P78357	1384 aa		13.71	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ARAP2	Q8WZ64	1704 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MROH5	Q6ZUA9	1318 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	PLIN1	O60240	522 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	BCAR3	O75815	825 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	TRIM27	P14373	513 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ZNF804A	Q7Z570	1209 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	PUS3	Q9BZE2	481 aa	Known RBP	13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MKRN1	Q9UHC7	482 aa	Known RBP	13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	RIPOR2	Q9Y4F9	1068 aa		13.7	□□□□□ -0.22
PPP4R1-208	ENST00000578178	USP17L8	P0C7I0	530 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	FMR1	Q06787	632 aa	Known RBP eCLIP	13.69	□□□□□ -0.22	2e-6	■■■■□ 20.3
PPP4R1-208	ENST00000578178	UBE4A	Q14139	1066 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	RBM26	Q5T8P6	1007 aa	Known RBP	13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	INTS3	Q68E01	1043 aa	Known RBP	13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ATF7IP	Q6VMQ6	1270 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	CDC37L1	Q7L3B6	337 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	FRAT1	Q92837	279 aa	Predicted RBP	13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MEIS3	Q99687	375 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	CD209	Q9NNX6	404 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	HDAC5	Q9UQL6	1122 aa		13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	POLR2A	P24928	1970 aa	Known RBP	13.69	□□□□□ -0.22
PPP4R1-208	ENST00000578178	LRRC24	Q50LG9	513 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	METTL24	Q5JXM2	366 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	TTLL5	Q6EMB2	1281 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	KLHDC4	Q8TBB5	520 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MXD3	Q9BW11	206 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MYOZ2	Q9NPC6	264 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	GGA3	Q9NZ52	723 aa		13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ABT1	Q9ULW3	272 aa	Known RBP	13.68	□□□□□ -0.22
PPP4R1-208	ENST00000578178	RASSF10	A6NK89	507 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	IL1R1	P14778	569 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	RFX5	P48382	616 aa	Predicted RBP	13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	GTF2I	P78347	998 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	KRT26	Q7Z3Y9	468 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	OGFOD1	Q8N543	542 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	VGLL2	Q8N8G2	317 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	DCPS	Q96C86	337 aa	Known RBP	13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	LRRFIP2	Q9Y608	721 aa	Known RBP	13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	THSD7B	Q9C0I4	1608 aa		13.67	□□□□□ -0.22
PPP4R1-208	ENST00000578178	CELF2	O95319	508 aa	Known RBP	13.66	□□□□□ -0.22
PPP4R1-208	ENST00000578178	GNAI3	P08754	354 aa		13.66	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MMP14	P50281	582 aa		13.66	□□□□□ -0.22
PPP4R1-208	ENST00000578178	PTPN12	Q05209	780 aa	Known RBP	13.66	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ZKSCAN2	Q63HK3	967 aa		13.66	□□□□□ -0.22
PPP4R1-208	ENST00000578178	TNN	Q9UQP3	1299 aa		13.66	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ASTN2	O75129	1339 aa	Predicted RBP	13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	PITPNM2	Q9BZ72	1349 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ECM29	Q5VYK3	1845 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	MYH13	Q9UKX3	1938 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ADM5	C9JUS6	153 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	EYA2	O00167	538 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	PDE8B	O95263	885 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	CST9	Q5W186	159 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	USP48	Q86UV5	1035 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	KIAA0825	Q8IV33	1275 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	SULF1	Q8IWU6	871 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	CLUAP1	Q96AJ1	413 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	ZNF408	Q9H9D4	720 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	FBXO3	Q9UK99	471 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	HDAC9	Q9UKV0	1011 aa		13.65	□□□□□ -0.22
PPP4R1-208	ENST00000578178	CIAO1	O76071	339 aa		13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	HIBADH	P31937	336 aa	Known RBP	13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	GYG1	P46976	350 aa		13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	FKBP1A	P62942	108 aa	Known RBP	13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	SCARF1	Q14162	830 aa		13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	PUM3	Q15397	648 aa	Known RBP	13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	ANGEL2	Q5VTE6	544 aa	Known RBP	13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	FAM84B	Q96KN1	310 aa	Predicted RBP	13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	TLL2	Q9Y6L7	1015 aa		13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	FAM205A	Q6ZU69	1335 aa		13.64	□□□□□ -0.23
PPP4R1-208	ENST00000578178	WNT10B	O00744	389 aa		13.63	□□□□□ -0.23
PPP4R1-208	ENST00000578178	VEGFB	P49765	207 aa		13.63	□□□□□ -0.23
PPP4R1-208	ENST00000578178	DEFB115	Q30KQ5	88 aa		13.63	□□□□□ -0.23
PPP4R1-208	ENST00000578178	VPS37D	Q86XT2	251 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms