RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 MAP3K2Q9Y2U5 619 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 CLCN6P51797 869 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 ANKRD36CQ5JPF3 1778 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 DOT1LQ8TEK3 1739 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 GOLGB1Q14789 3259 aaKnown RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 PIP4K2AP48426 406 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 TEFQ10587 303 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 TMC6Q7Z403 805 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 SH2B1Q9NRF2 756 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 DBF4Q9UBU7 674 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-212ENST00000574799 SLIT2O94813 1529 aa11.17□□□□□ -0.62
CCDC40-212ENST00000574799 PNMA6AP0CW24 399 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-212ENST00000574799 OAS2P29728 719 aaKnown RBP11.16□□□□□ -0.62
CCDC40-212ENST00000574799 NLRP2Q9NX02 1062 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 SNX14Q9Y5W7 946 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 RAB11FIP3O75154 756 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 C1orf141Q5JVX7 400 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 RUFY3Q7L099 469 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 UBTFL1P0CB47 393 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-212ENST00000574799 HSPA4P34932 840 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 EPHA10Q5JZY3 1008 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 DDX11Q96FC9 970 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 RREB1Q92766 1687 aa11.16□□□□□ -0.62
CCDC40-212ENST00000574799 TRIM66O15016 1216 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 SEC31AO94979 1220 aaKnown RBP11.15□□□□□ -0.62
CCDC40-212ENST00000574799 GSDMDP57764 484 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 HSP90B2PQ58FF3 399 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 IL17RAQ96F46 866 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 ZCCHC17Q9NP64 241 aaKnown RBP11.15□□□□□ -0.62
CCDC40-212ENST00000574799 USP42Q9H9J4 1324 aaKnown RBP11.15□□□□□ -0.62
CCDC40-212ENST00000574799 NBPF26B4DH59 902 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 CASP7P55210 303 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 NKX1-1Q15270 411 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-212ENST00000574799 NBPF14Q5TI25 921 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 NBPF10Q6P3W6 841 aaKnown RBP11.15□□□□□ -0.62
CCDC40-212ENST00000574799 KSR2Q6VAB6 950 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 CDC37L1Q7L3B6 337 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 NBPF15Q8N660 670 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 DRC1Q96MC2 740 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 DDX21Q9NR30 783 aaKnown RBP eCLIP11.15□□□□□ -0.62
CCDC40-212ENST00000574799 LRP6O75581 1613 aa11.15□□□□□ -0.62
CCDC40-212ENST00000574799 MYO1CO00159 1063 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 FAM193AP78312 1265 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 STX1AQ16623 288 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 AOPEPQ8N6M6 819 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 FUCA2Q9BTY2 467 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 ZSWIM4Q9H7M6 989 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 ARFGAP3Q9NP61 516 aa11.15□□□□□ -0.63
CCDC40-212ENST00000574799 NR1I2O75469 434 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 ME1P48163 572 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 SUCLG2Q96I99 432 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 ANO10Q9NW15 660 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 A0A087WWV3 80 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 RASEFQ8IZ41 740 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 TDRD7Q8NHU6 1098 aaKnown RBP11.14□□□□□ -0.63
CCDC40-212ENST00000574799 CLSTN2Q9H4D0 955 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.14□□□□□ -0.63
CCDC40-212ENST00000574799 CICQ96RK0 1608 aaPredicted RBP11.14□□□□□ -0.63
CCDC40-212ENST00000574799 LARGE1O95461 756 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 CASQ1P31415 396 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 SLC20A2Q08357 652 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 MCM6Q14566 821 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 CTR9Q6PD62 1173 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 LARP1Q6PKG0 1096 aaKnown RBP11.14□□□□□ -0.63
CCDC40-212ENST00000574799 IFNL2Q8IZJ0 200 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 DCAF5Q96JK2 942 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 CARD6Q9BX69 1037 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 EFCC1Q9HA90 598 aa11.14□□□□□ -0.63
CCDC40-212ENST00000574799 CAVIN2O95810 425 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 TTC31Q49AM3 519 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-212ENST00000574799 BLOC1S2Q6QNY1 142 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 PDILTQ8N807 584 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 GPATCH3Q96I76 525 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-212ENST00000574799 RPAP1Q9BWH6 1393 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-212ENST00000574799 PSMA5P28066 241 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 GYS2P54840 703 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 EVCP57679 992 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 SMC1AQ14683 1233 aaKnown RBP11.13□□□□□ -0.63
CCDC40-212ENST00000574799 NUP98P52948 1817 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 CCP110O43303 1012 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 SASH1O94885 1247 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 TPM1P09493 284 aa11.13□□□□□ -0.63
CCDC40-212ENST00000574799 ERCC4Q92889 916 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-212ENST00000574799 LAMA4Q16363 1823 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 RFX5P48382 616 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-212ENST00000574799 SLFNL1Q499Z3 407 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 PLA2G4DQ86XP0 818 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 SMARCE1Q969G3 411 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 CCDC102AQ96A19 550 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 CFAP45Q9UL16 551 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 PA2G4Q9UQ80 394 aaKnown RBP11.12□□□□□ -0.63
CCDC40-212ENST00000574799 NEURL1BA8MQ27 555 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 BIN1O00499 593 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 TATP17735 454 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-212ENST00000574799 ST5P78524 1137 aa11.12□□□□□ -0.63
CCDC40-212ENST00000574799 LEO1Q8WVC0 666 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-212ENST00000574799 IFIT2P09913 472 aaKnown RBP11.12□□□□□ -0.63
CCDC40-212ENST00000574799 COL9A3Q14050 684 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-212ENST00000574799 CCAR1Q8IX12 1150 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms