RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 FAM181BA6NEQ2 426 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 SMNDC1O75940 238 aaKnown RBP eCLIP8.37□□□□□ -1.07
NUP88-208ENST00000574087 LDHBP07195 334 aaKnown RBP8.37□□□□□ -1.07
NUP88-208ENST00000574087 CEP135Q66GS9 1140 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 ALG1LQ6GMV1 187 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 ADAMTSL4Q6UY14 1074 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 FBF1Q8TES7 1133 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 NXPE3Q969Y0 559 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 STK17AQ9UEE5 414 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 MKL2Q9ULH7 1088 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 TRIM33Q9UPN9 1127 aa8.37□□□□□ -1.07
NUP88-208ENST00000574087 PDE2AO00408 941 aaPredicted RBP8.36□□□□□ -1.07
NUP88-208ENST00000574087 BAG6P46379 1132 aa8.36□□□□□ -1.07
NUP88-208ENST00000574087 ATP2B2Q01814 1243 aa8.36□□□□□ -1.07
NUP88-208ENST00000574087 PI16Q6UXB8 463 aa8.36□□□□□ -1.07
NUP88-208ENST00000574087 BEND7Q8N7W2 519 aaPredicted RBP8.36□□□□□ -1.07
NUP88-208ENST00000574087 TRIM11Q96F44 468 aa8.36□□□□□ -1.07
NUP88-208ENST00000574087 BHLHE41Q9C0J9 482 aaPredicted RBP8.36□□□□□ -1.07
NUP88-208ENST00000574087 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.35□□□□□ -1.07
NUP88-208ENST00000574087 MSL1Q68DK7 614 aa8.35□□□□□ -1.07
NUP88-208ENST00000574087 CACTIN-AS1Q8N1I8 211 aa8.35□□□□□ -1.07
NUP88-208ENST00000574087 TCF12Q99081 682 aa8.35□□□□□ -1.07
NUP88-208ENST00000574087 ADAM19Q9H013 955 aa8.35□□□□□ -1.07
NUP88-208ENST00000574087 SUV39H2Q9H5I1 410 aa8.35□□□□□ -1.07
NUP88-208ENST00000574087 PODXL2Q9NZ53 605 aa8.35□□□□□ -1.07
NUP88-208ENST00000574087 CCDC9Q9Y3X0 531 aaKnown RBP8.35□□□□□ -1.07
NUP88-208ENST00000574087 GNB5O14775 395 aa8.34□□□□□ -1.07
NUP88-208ENST00000574087 PRPF40AO75400 957 aaKnown RBP8.34□□□□□ -1.07
NUP88-208ENST00000574087 GDF6Q6KF10 455 aaPredicted RBP8.34□□□□□ -1.07
NUP88-208ENST00000574087 PODNQ7Z5L7 613 aa8.34□□□□□ -1.07
NUP88-208ENST00000574087 CCNJLQ8IV13 435 aa8.34□□□□□ -1.07
NUP88-208ENST00000574087 RGS22Q8NE09 1264 aa8.34□□□□□ -1.07
NUP88-208ENST00000574087 SCARF2Q96GP6 870 aaPredicted RBP8.34□□□□□ -1.07
NUP88-208ENST00000574087 LIN7BQ9HAP6 207 aa8.34□□□□□ -1.07
NUP88-208ENST00000574087 NLRP2Q9NX02 1062 aa8.34□□□□□ -1.07
NUP88-208ENST00000574087 FGD1P98174 961 aa8.33□□□□□ -1.08
NUP88-208ENST00000574087 TAGLNQ01995 201 aaKnown RBP8.33□□□□□ -1.08
NUP88-208ENST00000574087 GRM2Q14416 872 aa8.33□□□□□ -1.08
NUP88-208ENST00000574087 GLIS3Q8NEA6 775 aa8.33□□□□□ -1.08
NUP88-208ENST00000574087 LACRTQ9GZZ8 138 aa8.33□□□□□ -1.08
NUP88-208ENST00000574087 EHD4Q9H223 541 aa8.33□□□□□ -1.08
NUP88-208ENST00000574087 PIK3R2O00459 728 aa8.32□□□□□ -1.08
NUP88-208ENST00000574087 GADD45BO75293 160 aaPredicted RBP8.32□□□□□ -1.08
NUP88-208ENST00000574087 PTPRAP18433 802 aa8.32□□□□□ -1.08
NUP88-208ENST00000574087 PRPF40BQ6NWY9 871 aaKnown RBP8.32□□□□□ -1.08
NUP88-208ENST00000574087 IL22RA1Q8N6P7 574 aa8.32□□□□□ -1.08
NUP88-208ENST00000574087 PLVAPQ9BX97 442 aa8.32□□□□□ -1.08
NUP88-208ENST00000574087 BCL2L13Q9BXK5 485 aa8.32□□□□□ -1.08
NUP88-208ENST00000574087 SOX13Q9UN79 622 aa8.32□□□□□ -1.08
NUP88-208ENST00000574087 METTL12A8MUP2 240 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 CDC27P30260 824 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 GRIA4P48058 902 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 WFDC8Q8IUA0 241 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 DMRTC2Q8IXT2 367 aaPredicted RBP8.31□□□□□ -1.08
NUP88-208ENST00000574087 DUSP9Q99956 384 aaKnown RBP8.31□□□□□ -1.08
NUP88-208ENST00000574087 BCO2Q9BYV7 579 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 ABCB6Q9NP58 842 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 RNF19AQ9NV58 838 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 TRAK1Q9UPV9 953 aa8.31□□□□□ -1.08
NUP88-208ENST00000574087 ASAP3Q8TDY4 903 aa8.3□□□□□ -1.08
NUP88-208ENST00000574087 BSNDQ8WZ55 320 aa8.3□□□□□ -1.08
NUP88-208ENST00000574087 FRMD6Q96NE9 622 aa8.3□□□□□ -1.08
NUP88-208ENST00000574087 OSBPL7Q9BZF2 842 aa8.3□□□□□ -1.08
NUP88-208ENST00000574087 SH2B1Q9NRF2 756 aaPredicted RBP8.3□□□□□ -1.08
NUP88-208ENST00000574087 A0A096LPE4 126 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 A0A1W2PPZ6 126 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 GIPC1O14908 333 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 EPHA1P21709 976 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 GNA15P30679 374 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 SPRED3Q2MJR0 410 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 TRAPPC3LQ5T215 181 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 NXPE4Q6UWF7 544 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 GIPC2Q8TF65 315 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 MUC3BQ9H195 1237 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 NOP53Q9NZM5 478 aaKnown RBP8.29□□□□□ -1.08
NUP88-208ENST00000574087 PARP2Q9UGN5 583 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 SPG7Q9UQ90 795 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 PPME1Q9Y570 386 aa8.29□□□□□ -1.08
NUP88-208ENST00000574087 A0A0A0MRY4 1105 aa8.28□□□□□ -1.08
NUP88-208ENST00000574087 TMEM238LA0A1B0GVL6 79 aa8.28□□□□□ -1.08
NUP88-208ENST00000574087 ITPKAP23677 461 aa8.28□□□□□ -1.08
NUP88-208ENST00000574087 COL8A1P27658 744 aa8.28□□□□□ -1.08
NUP88-208ENST00000574087 VN1R5Q7Z5H4 357 aa8.28□□□□□ -1.08
NUP88-208ENST00000574087 DTWD1Q8N5C7 304 aa8.28□□□□□ -1.08
NUP88-208ENST00000574087 RBM47A0AV96 593 aaKnown RBP8.27□□□□□ -1.09
NUP88-208ENST00000574087 SPDYE3A6NKU9 549 aa8.27□□□□□ -1.09
NUP88-208ENST00000574087 ZNF16P17020 682 aaPredicted RBP8.27□□□□□ -1.09
NUP88-208ENST00000574087 DAB2P98082 770 aa8.27□□□□□ -1.09
NUP88-208ENST00000574087 PTPN12Q05209 780 aaKnown RBP8.27□□□□□ -1.09
NUP88-208ENST00000574087 SRCIN1Q9C0H9 1055 aa8.27□□□□□ -1.09
NUP88-208ENST00000574087 C12orf49Q9H741 205 aa8.27□□□□□ -1.09
NUP88-208ENST00000574087 AK5Q9Y6K8 562 aa8.27□□□□□ -1.09
NUP88-208ENST00000574087 FAM177BA6PVY3 158 aa8.26□□□□□ -1.09
NUP88-208ENST00000574087 H3BRJ5 948 aa8.26□□□□□ -1.09
NUP88-208ENST00000574087 LINC01387J3KSC0 135 aa8.26□□□□□ -1.09
NUP88-208ENST00000574087 TM4SF5O14894 197 aa8.26□□□□□ -1.09
NUP88-208ENST00000574087 ZNF326Q5BKZ1 582 aaKnown RBP8.26□□□□□ -1.09
NUP88-208ENST00000574087 TMC4Q7Z404 712 aa8.26□□□□□ -1.09
NUP88-208ENST00000574087 FMR1NBQ8N0W7 255 aaPredicted RBP8.26□□□□□ -1.09
NUP88-208ENST00000574087 PPP4R2Q9NY27 417 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms