RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 XAGE3Q8WTP9 111 aa17.17■□□□□ 0.34
CCDC40-208ENST00000572270 DPF3Q92784 378 aa17.17■□□□□ 0.34
CCDC40-208ENST00000572270 PODNQ7Z5L7 613 aa17.16■□□□□ 0.34
CCDC40-208ENST00000572270 FAM89AQ96GI7 184 aa17.16■□□□□ 0.34
CCDC40-208ENST00000572270 WNK4Q96J92 1243 aa17.16■□□□□ 0.34
CCDC40-208ENST00000572270 TSPYL4Q9UJ04 414 aa17.16■□□□□ 0.34
CCDC40-208ENST00000572270 RANBP2P49792 3224 aaKnown RBP17.15■□□□□ 0.34
CCDC40-208ENST00000572270 MYCP01106 439 aaPredicted RBP17.15■□□□□ 0.34
CCDC40-208ENST00000572270 COL1A1P02452 1464 aaPredicted RBP17.14■□□□□ 0.33
CCDC40-208ENST00000572270 SASH1O94885 1247 aa17.14■□□□□ 0.33
CCDC40-208ENST00000572270 FBXW7Q969H0 707 aa17.14■□□□□ 0.33
CCDC40-208ENST00000572270 PTCH2Q9Y6C5 1203 aa17.14■□□□□ 0.33
CCDC40-208ENST00000572270 MYO3BQ8WXR4 1341 aa17.14■□□□□ 0.33
CCDC40-208ENST00000572270 IRS4O14654 1257 aaPredicted RBP17.12■□□□□ 0.33
CCDC40-208ENST00000572270 PPP1R12BO60237 982 aaPredicted RBP17.12■□□□□ 0.33
CCDC40-208ENST00000572270 RTL5Q5HYW3 569 aaPredicted RBP17.12■□□□□ 0.33
CCDC40-208ENST00000572270 FZD1Q9UP38 647 aa17.12■□□□□ 0.33
CCDC40-208ENST00000572270 XDHP47989 1333 aa17.12■□□□□ 0.33
CCDC40-208ENST00000572270 CUL9Q8IWT3 2517 aa17.11■□□□□ 0.33
CCDC40-208ENST00000572270 MMP14P50281 582 aa17.11■□□□□ 0.33
CCDC40-208ENST00000572270 MAP3K11Q16584 847 aa17.11■□□□□ 0.33
CCDC40-208ENST00000572270 CLMNQ96JQ2 1002 aa17.11■□□□□ 0.33
CCDC40-208ENST00000572270 UNCXA6NJT0 531 aa17.1■□□□□ 0.33
CCDC40-208ENST00000572270 HSP90B1P14625 803 aaKnown RBP17.1■□□□□ 0.33
CCDC40-208ENST00000572270 ATP2B4P23634 1241 aa17.1■□□□□ 0.33
CCDC40-208ENST00000572270 CAP1Q01518 475 aa17.1■□□□□ 0.33
CCDC40-208ENST00000572270 HTATIP2Q9BUP3 242 aa17.1■□□□□ 0.33
CCDC40-208ENST00000572270 CLSPNQ9HAW4 1339 aa17.1■□□□□ 0.33
CCDC40-208ENST00000572270 ATP5J2-PTCD1G3V325 749 aa17.09■□□□□ 0.33
CCDC40-208ENST00000572270 NFE2L2Q16236 605 aa17.09■□□□□ 0.33
CCDC40-208ENST00000572270 DACT2Q5SW24 774 aa17.09■□□□□ 0.33
CCDC40-208ENST00000572270 ISCA1Q9BUE6 129 aa17.09■□□□□ 0.33
CCDC40-208ENST00000572270 MXD3Q9BW11 206 aa17.09■□□□□ 0.33
CCDC40-208ENST00000572270 SEC31BQ9NQW1 1179 aa17.09■□□□□ 0.33
CCDC40-208ENST00000572270 ZNF646O15015 1829 aaPredicted RBP17.08■□□□□ 0.33
CCDC40-208ENST00000572270 A0A1W2PPC1 479 aa17.08■□□□□ 0.32
CCDC40-208ENST00000572270 PLBD2Q8NHP8 589 aa17.08■□□□□ 0.32
CCDC40-208ENST00000572270 SH3TC2Q8TF17 1288 aa17.08■□□□□ 0.32
CCDC40-208ENST00000572270 DEFB129Q9H1M3 183 aa17.08■□□□□ 0.32
CCDC40-208ENST00000572270 NR2E3Q9Y5X4 410 aa17.08■□□□□ 0.32
CCDC40-208ENST00000572270 MED23Q9ULK4 1368 aa17.07■□□□□ 0.32
CCDC40-208ENST00000572270 WTIPA6NIX2 430 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-208ENST00000572270 IREB2P48200 963 aaKnown RBP17.07■□□□□ 0.32
CCDC40-208ENST00000572270 CCDC152Q4G0S7 254 aa17.07■□□□□ 0.32
CCDC40-208ENST00000572270 STRIP1Q5VSL9 837 aa17.07■□□□□ 0.32
CCDC40-208ENST00000572270 PRO3102Q9H379 93 aa17.07■□□□□ 0.32
CCDC40-208ENST00000572270 ZFYVE28Q9HCC9 887 aa17.07■□□□□ 0.32
CCDC40-208ENST00000572270 TESPA1A2RU30 521 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-208ENST00000572270 KIF22Q14807 665 aa17.06■□□□□ 0.32
CCDC40-208ENST00000572270 TAF1CQ15572 869 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-208ENST00000572270 ANKRD13DQ6ZTN6 518 aa17.06■□□□□ 0.32
CCDC40-208ENST00000572270 ANKRD18AQ8IVF6 992 aa17.06■□□□□ 0.32
CCDC40-208ENST00000572270 PTPN18Q99952 460 aa17.06■□□□□ 0.32
CCDC40-208ENST00000572270 PPP2R3BQ9Y5P8 575 aa17.06■□□□□ 0.32
CCDC40-208ENST00000572270 SSC5DA1L4H1 1573 aa17.06■□□□□ 0.32
CCDC40-208ENST00000572270 MAPK8IP3Q9UPT6 1336 aa17.05■□□□□ 0.32
CCDC40-208ENST00000572270 PPP2R1AP30153 589 aa17.05■□□□□ 0.32
CCDC40-208ENST00000572270 GJA5P36382 358 aa17.05■□□□□ 0.32
CCDC40-208ENST00000572270 SUPT20HL1Q3ZLR7 823 aa17.05■□□□□ 0.32
CCDC40-208ENST00000572270 NKX2-3Q8TAU0 364 aa17.05■□□□□ 0.32
CCDC40-208ENST00000572270 ECM29Q5VYK3 1845 aa17.05■□□□□ 0.32
CCDC40-208ENST00000572270 WDHD1O75717 1129 aaPredicted RBP17.04■□□□□ 0.32
CCDC40-208ENST00000572270 KIAA0825Q8IV33 1275 aa17.04■□□□□ 0.32
CCDC40-208ENST00000572270 ANKRD13AQ8IZ07 590 aa17.04■□□□□ 0.32
CCDC40-208ENST00000572270 SHISA4Q96DD7 197 aa17.04■□□□□ 0.32
CCDC40-208ENST00000572270 LRCH3Q96II8 777 aa17.04■□□□□ 0.32
CCDC40-208ENST00000572270 BABAM1Q9NWV8 329 aa17.04■□□□□ 0.32
CCDC40-208ENST00000572270 SOX1O00570 391 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-208ENST00000572270 ZBTB38Q8NAP3 1195 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-208ENST00000572270 COA1Q9GZY4 146 aa17.03■□□□□ 0.32
CCDC40-208ENST00000572270 CHPF2Q9P2E5 772 aa17.03■□□□□ 0.32
CCDC40-208ENST00000572270 DLGAP5Q15398 846 aa17.02■□□□□ 0.32
CCDC40-208ENST00000572270 TTLL5Q6EMB2 1281 aa17.02■□□□□ 0.32
CCDC40-208ENST00000572270 OPTNQ96CV9 577 aa17.02■□□□□ 0.32
CCDC40-208ENST00000572270 ZBED3Q96IU2 234 aaPredicted RBP17.02■□□□□ 0.32
CCDC40-208ENST00000572270 CCDC85AQ96PX6 553 aaPredicted RBP17.02■□□□□ 0.32
CCDC40-208ENST00000572270 LAMA3Q16787 3333 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 OTOFQ9HC10 1997 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 ZBTB7BO15156 539 aaPredicted RBP17.01■□□□□ 0.31
CCDC40-208ENST00000572270 MYO1BO43795 1136 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 GNRH1P01148 92 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 PRMT2P55345 433 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 TRIM28Q13263 835 aaKnown RBP17.01■□□□□ 0.31
CCDC40-208ENST00000572270 PLEKHF1Q96S99 279 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 PNNQ9H307 717 aaKnown RBP17.01■□□□□ 0.31
CCDC40-208ENST00000572270 ELP3Q9H9T3 547 aa17.01■□□□□ 0.31
CCDC40-208ENST00000572270 ZSWIM8A7E2V4 1837 aa17■□□□□ 0.31
CCDC40-208ENST00000572270 SPEF2Q9C093 1822 aa17■□□□□ 0.31
CCDC40-208ENST00000572270 ZNF804BA4D1E1 1349 aa17■□□□□ 0.31
CCDC40-208ENST00000572270 UNC80Q8N2C7 3258 aa17■□□□□ 0.31
CCDC40-208ENST00000572270 PDE8AO60658 829 aa17■□□□□ 0.31
CCDC40-208ENST00000572270 MTFR1Q15390 333 aa17■□□□□ 0.31
CCDC40-208ENST00000572270 CDC5LQ99459 802 aaKnown RBP17■□□□□ 0.31
CCDC40-208ENST00000572270 CCL15-CCL14A0A0B4J2E2 113 aa16.99■□□□□ 0.31
CCDC40-208ENST00000572270 USP2O75604 605 aaPredicted RBP16.99■□□□□ 0.31
CCDC40-208ENST00000572270 GTF2A2P52657 109 aa16.99■□□□□ 0.31
CCDC40-208ENST00000572270 LACTBP83111 547 aaPredicted RBP16.99■□□□□ 0.31
CCDC40-208ENST00000572270 CCL15Q16663 113 aa16.99■□□□□ 0.31
CCDC40-208ENST00000572270 HDGFL1Q5TGJ6 251 aa16.99■□□□□ 0.31
CCDC40-208ENST00000572270 MS4A4AQ96JQ5 239 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms