RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 DOT1LQ8TEK3 1739 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 GOLGB1Q14789 3259 aaKnown RBP11.78□□□□□ -0.52
VPS53-206ENST00000570359 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.78□□□□□ -0.52
VPS53-206ENST00000570359 CIAO1O76071 339 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 MPHOSPH8Q99549 860 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 COL14A1Q05707 1796 aaKnown RBP11.78□□□□□ -0.52
VPS53-206ENST00000570359 PLCB2Q00722 1185 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 ZMYM1Q5SVZ6 1142 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 INTS5Q6P9B9 1019 aaKnown RBP11.78□□□□□ -0.52
VPS53-206ENST00000570359 ANP32BQ92688 251 aaKnown RBP11.78□□□□□ -0.52
VPS53-206ENST00000570359 HMG20BQ9P0W2 317 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 EP400Q96L91 3159 aa11.78□□□□□ -0.52
VPS53-206ENST00000570359 WTIPA6NIX2 430 aaPredicted RBP11.77□□□□□ -0.53
VPS53-206ENST00000570359 PDE8AO60658 829 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 SLC9C2Q5TAH2 1124 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 IL17RAQ96F46 866 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 PKNOX2Q96KN3 472 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 DENND2AQ9ULE3 1009 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 PALLDQ8WX93 1383 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 PLEKHG2Q9H7P9 1386 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 E7EWF7 191 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 CSF1RP07333 972 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 GTF2E1P29083 439 aaPredicted RBP11.77□□□□□ -0.53
VPS53-206ENST00000570359 IL6STP40189 918 aaPredicted RBP11.77□□□□□ -0.53
VPS53-206ENST00000570359 FAM184AQ8NB25 1140 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 KCNB2Q92953 911 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 RIPOR2Q9Y4F9 1068 aa11.77□□□□□ -0.53
VPS53-206ENST00000570359 H3BQV1 296 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 IFFO2Q5TF58 517 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 PIH1D3Q9NQM4 214 aaKnown RBP11.76□□□□□ -0.53
VPS53-206ENST00000570359 RIC1Q4ADV7 1423 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 SH3TC1Q8TE82 1336 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 KRT32Q14532 448 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 ANKRD1Q15327 319 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 GPR108Q9NPR9 543 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 HELLSQ9NRZ9 838 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 PHLPP1O60346 1717 aa11.76□□□□□ -0.53
VPS53-206ENST00000570359 GPAA1O43292 621 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 MBD3O95983 291 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 RXRAP19793 462 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 SCRN1Q12765 414 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 TRIM28Q13263 835 aaKnown RBP11.75□□□□□ -0.53
VPS53-206ENST00000570359 CCDC102BQ68D86 513 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 UTP14AQ9BVJ6 771 aaKnown RBP11.75□□□□□ -0.53
VPS53-206ENST00000570359 INCENPQ9NQS7 918 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 NPHP1O15259 732 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 CAMK4Q16566 473 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 USPL1Q5W0Q7 1092 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 WWC3Q9ULE0 1092 aa11.75□□□□□ -0.53
VPS53-206ENST00000570359 PHF14O94880 888 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 EIF5P55010 431 aaKnown RBP11.74□□□□□ -0.53
VPS53-206ENST00000570359 GLIPR1L2Q4G1C9 344 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 GIMAP6Q6P9H5 292 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 CCDC144CPQ8IYA2 1237 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 NUP98P52948 1817 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 PLCH1Q4KWH8 1693 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 PDE8BO95263 885 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 FGAP02671 866 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 BCAMP50895 628 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 GTF3C6Q969F1 213 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 FTOQ9C0B1 505 aaKnown RBP eCLIP11.74□□□□□ -0.53
VPS53-206ENST00000570359 TOMM22Q9NS69 142 aa11.74□□□□□ -0.53
VPS53-206ENST00000570359 TOM1O60784 492 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 ZNF445P59923 1031 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 OTUD7BQ6GQQ9 843 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 LRSAM1Q6UWE0 723 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 C3orf67Q6ZVT6 689 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 DHX32Q7L7V1 743 aaKnown RBP11.73□□□□□ -0.53
VPS53-206ENST00000570359 ZNF34Q8IZ26 560 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 SRP68Q9UHB9 627 aaKnown RBP11.73□□□□□ -0.53
VPS53-206ENST00000570359 JAG2Q9Y219 1238 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 ZNF532Q9HCE3 1301 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 LRP6O75581 1613 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 CAMTA2O94983 1202 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 MIGA1Q8NAN2 632 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 LINC00116Q8NCU8 138 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 ATP6V1DQ9Y5K8 247 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 GOLGA6L4A6NEF3 574 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 IMMTQ16891 758 aaKnown RBP11.73□□□□□ -0.53
VPS53-206ENST00000570359 ERFEQ4G0M1 354 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 MAGEB6Q8N7X4 407 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 DSCC1Q9BVC3 393 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 PLA2G12BQ9BX93 195 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 ABCF2Q9UG63 623 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 CDHR2Q9BYE9 1310 aa11.73□□□□□ -0.53
VPS53-206ENST00000570359 SLIT2O94813 1529 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 PTPDC1A2A3K4 754 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 FOXP2O15409 715 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 RRP12Q5JTH9 1297 aaKnown RBP11.72□□□□□ -0.53
VPS53-206ENST00000570359 RALYLQ86SE5 291 aaKnown RBP11.72□□□□□ -0.53
VPS53-206ENST00000570359 NKX2-3Q8TAU0 364 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 APPBP2Q92624 585 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 SYAP1Q96A49 352 aaPredicted RBP11.72□□□□□ -0.53
VPS53-206ENST00000570359 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS53-206ENST00000570359 TSPY26PQ9H489 355 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 GJB4Q9NTQ9 266 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 MYO5AQ9Y4I1 1855 aaKnown RBP11.72□□□□□ -0.53
VPS53-206ENST00000570359 IGHMBP2P38935 993 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms