RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 FAM227BQ96M60 508 aa22.93■■□□□ 1.26
CLN3-233ENST00000568452 LSG1Q9H089 658 aaKnown RBP22.93■■□□□ 1.26
CLN3-233ENST00000568452 NRXN2Q9P2S2 1712 aa22.92■■□□□ 1.26
CLN3-233ENST00000568452 A0A1B0GUL6 1792 aa22.92■■□□□ 1.26
CLN3-233ENST00000568452 TAF1P21675 1872 aa22.92■■□□□ 1.26
CLN3-233ENST00000568452 A0A0D9SFI3 127 aa22.91■■□□□ 1.26
CLN3-233ENST00000568452 MCAMP43121 646 aa22.91■■□□□ 1.26
CLN3-233ENST00000568452 ZAP70P43403 619 aa22.91■■□□□ 1.26
CLN3-233ENST00000568452 SCARF1Q14162 830 aa22.91■■□□□ 1.26
CLN3-233ENST00000568452 BRIP1Q9BX63 1249 aa22.91■■□□□ 1.26
CLN3-233ENST00000568452 ZFYP08048 801 aaPredicted RBP22.9■■□□□ 1.26
CLN3-233ENST00000568452 MMP10P09238 476 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 HOXA10P31260 410 aaPredicted RBP22.9■■□□□ 1.26
CLN3-233ENST00000568452 KCNJ4P48050 445 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 HELLSQ9NRZ9 838 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 MED23Q9ULK4 1368 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 SNAP23O00161 211 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 SNX21Q969T3 373 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 CRAMP1Q96RY5 1269 aa22.9■■□□□ 1.26
CLN3-233ENST00000568452 GNL3LQ9NVN8 582 aaKnown RBP22.9■■□□□ 1.26
CLN3-233ENST00000568452 CCDC171Q6TFL3 1326 aa22.89■■□□□ 1.26
CLN3-233ENST00000568452 RNF113AO15541 343 aaKnown RBP22.89■■□□□ 1.25
CLN3-233ENST00000568452 MCMDC2Q4G0Z9 681 aa22.89■■□□□ 1.25
CLN3-233ENST00000568452 CAVIN4Q5BKX8 364 aa22.89■■□□□ 1.25
CLN3-233ENST00000568452 ZSCAN25Q6NSZ9 544 aa22.89■■□□□ 1.25
CLN3-233ENST00000568452 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.89■■□□□ 1.252e-6■■■■■ 40.7
CLN3-233ENST00000568452 ANTXR1Q9H6X2 564 aa22.89■■□□□ 1.25
CLN3-233ENST00000568452 BBOX1O75936 387 aa22.88■■□□□ 1.25
CLN3-233ENST00000568452 HSPA4P34932 840 aa22.88■■□□□ 1.25
CLN3-233ENST00000568452 IL27Q8NEV9 243 aa22.88■■□□□ 1.25
CLN3-233ENST00000568452 IL17RAQ96F46 866 aa22.88■■□□□ 1.25
CLN3-233ENST00000568452 PDE6BP35913 854 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 ZMYM1Q5SVZ6 1142 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 TMC4Q7Z404 712 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 HSCBQ8IWL3 235 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 SPATA5Q8NB90 893 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 TBC1D2Q9BYX2 928 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 AKAP11Q9UKA4 1901 aa22.87■■□□□ 1.25
CLN3-233ENST00000568452 BCAMP50895 628 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 HMG20BQ9P0W2 317 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 ZNF804BA4D1E1 1349 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 SOCS7O14512 581 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 MSL1Q68DK7 614 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 PI16Q6UXB8 463 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 LEMD3Q9Y2U8 911 aa22.86■■□□□ 1.25
CLN3-233ENST00000568452 CYP2E1P05181 493 aaPredicted RBP22.85■■□□□ 1.25
CLN3-233ENST00000568452 RASGRF1Q13972 1273 aa22.85■■□□□ 1.25
CLN3-233ENST00000568452 MAP4K1Q92918 833 aa22.85■■□□□ 1.25
CLN3-233ENST00000568452 XDHP47989 1333 aa22.85■■□□□ 1.25
CLN3-233ENST00000568452 PTH1RQ03431 593 aa22.84■■□□□ 1.25
CLN3-233ENST00000568452 ERICH6Q7L0X2 663 aa22.84■■□□□ 1.25
CLN3-233ENST00000568452 VPS37DQ86XT2 251 aa22.84■■□□□ 1.25
CLN3-233ENST00000568452 SEMA3EO15041 775 aa22.83■■□□□ 1.25
CLN3-233ENST00000568452 NPR1P16066 1061 aa22.83■■□□□ 1.25
CLN3-233ENST00000568452 ZNF589Q86UQ0 364 aaPredicted RBP22.83■■□□□ 1.25
CLN3-233ENST00000568452 ANKIB1Q9P2G1 1089 aa22.83■■□□□ 1.25
CLN3-233ENST00000568452 ANKRD31Q8N7Z5 1873 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 ST18O60284 1047 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 SLC4A3P48751 1232 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 FBXO33Q7Z6M2 555 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 APPBP2Q92624 585 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 FAM84BQ96KN1 310 aaPredicted RBP22.82■■□□□ 1.24
CLN3-233ENST00000568452 ZBTB22O15209 634 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 GYG1P46976 350 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 DENND2AQ9ULE3 1009 aa22.82■■□□□ 1.24
CLN3-233ENST00000568452 RBM8AQ9Y5S9 174 aaKnown RBP22.82■■□□□ 1.24
CLN3-233ENST00000568452 SRGNP10124 158 aa22.81■■□□□ 1.24
CLN3-233ENST00000568452 ALDH1B1P30837 517 aa22.81■■□□□ 1.24
CLN3-233ENST00000568452 RNF20Q5VTR2 975 aa22.81■■□□□ 1.24
CLN3-233ENST00000568452 SEC62Q99442 399 aaKnown RBP22.81■■□□□ 1.24
CLN3-233ENST00000568452 PIH1D3Q9NQM4 214 aaKnown RBP22.81■■□□□ 1.24
CLN3-233ENST00000568452 PALD1Q9ULE6 856 aa22.81■■□□□ 1.24
CLN3-233ENST00000568452 IDH1O75874 414 aaKnown RBP22.8■■□□□ 1.24
CLN3-233ENST00000568452 ATP2B4P23634 1241 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 HIBADHP31937 336 aaKnown RBP22.8■■□□□ 1.24
CLN3-233ENST00000568452 ADD2P35612 726 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 MAP3K12Q12852 859 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 NECTIN1Q15223 517 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 UBE3CQ15386 1083 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 WASHC4Q2M389 1173 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 SLC16A10Q8TF71 515 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 KCNB2Q92953 911 aa22.8■■□□□ 1.24
CLN3-233ENST00000568452 U3KPZ7 1027 aaPredicted RBP22.8■■□□□ 1.24
CLN3-233ENST00000568452 MAST3O60307 1309 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 PDS5AQ29RF7 1337 aaKnown RBP22.79■■□□□ 1.24
CLN3-233ENST00000568452 MYH7P12883 1935 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 ZKSCAN1P17029 563 aaPredicted RBP22.79■■□□□ 1.24
CLN3-233ENST00000568452 C15orf52Q6ZUT6 534 aaKnown RBP22.79■■□□□ 1.24
CLN3-233ENST00000568452 MASTLQ96GX5 879 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 SNX14Q9Y5W7 946 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 PPEF1O14829 653 aaPredicted RBP22.79■■□□□ 1.24
CLN3-233ENST00000568452 CHGBP05060 677 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 SLC9C2Q5TAH2 1124 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 SP8Q8IXZ3 490 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 DSCC1Q9BVC3 393 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 PODXL2Q9NZ53 605 aa22.79■■□□□ 1.24
CLN3-233ENST00000568452 R3HDM1Q15032 1099 aaKnown RBP22.78■■□□□ 1.24
CLN3-233ENST00000568452 PRPF40BQ6NWY9 871 aaKnown RBP22.78■■□□□ 1.24
CLN3-233ENST00000568452 CCDC129Q6ZRS4 1044 aa22.78■■□□□ 1.24
CLN3-233ENST00000568452 OSBP2Q969R2 916 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms