RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 HELBQ8NG08 1087 aaPredicted RBP18.93■□□□□ 0.62
VPS39-210ENST00000568357 MYH3P11055 1940 aa18.93■□□□□ 0.62
VPS39-210ENST00000568357 SNAP23O00161 211 aa18.92■□□□□ 0.62
VPS39-210ENST00000568357 KLRK1P26718 216 aa18.92■□□□□ 0.62
VPS39-210ENST00000568357 LDHAL6AQ6ZMR3 332 aa18.92■□□□□ 0.62
VPS39-210ENST00000568357 CNOT7Q9UIV1 285 aaKnown RBP18.92■□□□□ 0.62
VPS39-210ENST00000568357 ABT1Q9ULW3 272 aaKnown RBP18.92■□□□□ 0.62
VPS39-210ENST00000568357 ZNF804BA4D1E1 1349 aa18.92■□□□□ 0.62
VPS39-210ENST00000568357 TAF7LQ5H9L4 462 aa18.91■□□□□ 0.62
VPS39-210ENST00000568357 USP50Q70EL3 339 aaPredicted RBP18.91■□□□□ 0.62
VPS39-210ENST00000568357 CNTROBQ8N137 903 aa18.91■□□□□ 0.62
VPS39-210ENST00000568357 PUS3Q9BZE2 481 aaKnown RBP18.91■□□□□ 0.62
VPS39-210ENST00000568357 ADARB2Q9NS39 739 aaKnown RBP18.91■□□□□ 0.62
VPS39-210ENST00000568357 MED23Q9ULK4 1368 aa18.91■□□□□ 0.62
VPS39-210ENST00000568357 VIL1P09327 827 aaKnown RBP18.9■□□□□ 0.62
VPS39-210ENST00000568357 PODNQ7Z5L7 613 aa18.9■□□□□ 0.62
VPS39-210ENST00000568357 DPF2Q92785 391 aa18.9■□□□□ 0.62
VPS39-210ENST00000568357 CNNM1Q9NRU3 951 aa18.9■□□□□ 0.62
VPS39-210ENST00000568357 TSKSQ9UJT2 592 aa18.9■□□□□ 0.62
VPS39-210ENST00000568357 TNNQ9UQP3 1299 aa18.9■□□□□ 0.62
VPS39-210ENST00000568357 KIF16BQ96L93 1317 aa18.9■□□□□ 0.62
VPS39-210ENST00000568357 TRPM7Q96QT4 1865 aa18.89■□□□□ 0.61
VPS39-210ENST00000568357 TRIM27P14373 513 aa18.89■□□□□ 0.61
VPS39-210ENST00000568357 HIRAP54198 1017 aaPredicted RBP18.89■□□□□ 0.61
VPS39-210ENST00000568357 INTS3Q68E01 1043 aaKnown RBP18.89■□□□□ 0.61
VPS39-210ENST00000568357 MICALL2Q8IY33 904 aa18.89■□□□□ 0.61
VPS39-210ENST00000568357 FRAT1Q92837 279 aaPredicted RBP18.89■□□□□ 0.61
VPS39-210ENST00000568357 TNRC18O15417 2968 aaPredicted RBP18.88■□□□□ 0.61
VPS39-210ENST00000568357 IPO8O15397 1037 aaKnown RBP18.88■□□□□ 0.61
VPS39-210ENST00000568357 PLIN1O60240 522 aa18.88■□□□□ 0.61
VPS39-210ENST00000568357 KCNJ4P48050 445 aa18.88■□□□□ 0.61
VPS39-210ENST00000568357 FMR1Q06787 632 aaKnown RBP eCLIP18.88■□□□□ 0.61
VPS39-210ENST00000568357 RIPOR2Q9Y4F9 1068 aa18.88■□□□□ 0.61
VPS39-210ENST00000568357 IRS2Q9Y4H2 1338 aa18.88■□□□□ 0.61
VPS39-210ENST00000568357 H7C1D1 291 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 RPS12P25398 132 aaKnown RBP18.87■□□□□ 0.61
VPS39-210ENST00000568357 GRM1Q13255 1194 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 ATF7IPQ6VMQ6 1270 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 PAXIP1Q6ZW49 1069 aaPredicted RBP18.87■□□□□ 0.61
VPS39-210ENST00000568357 SAMD7Q7Z3H4 446 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 KLHDC4Q8TBB5 520 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 TRPM4Q8TD43 1214 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 CAPNS2Q96L46 248 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 COA1Q9GZY4 146 aa18.87■□□□□ 0.61
VPS39-210ENST00000568357 SPEF2Q9C093 1822 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 USP17L3A6NCW0 530 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 USP17L4A6NCW7 530 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 UBTFL1P0CB47 393 aaPredicted RBP18.86■□□□□ 0.61
VPS39-210ENST00000568357 LRRC24Q50LG9 513 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 CYP4F22Q6NT55 531 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 RSBN1LQ6PCB5 846 aaPredicted RBP18.86■□□□□ 0.61
VPS39-210ENST00000568357 USP17L1Q7RTZ2 530 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 MEIS3Q99687 375 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 CASP8AP2Q9UKL3 1982 aa18.86■□□□□ 0.61
VPS39-210ENST00000568357 EGFRP00533 1210 aa18.85■□□□□ 0.61
VPS39-210ENST00000568357 RFX5P48382 616 aaPredicted RBP18.85■□□□□ 0.61
VPS39-210ENST00000568357 C15orf52Q6ZUT6 534 aaKnown RBP18.85■□□□□ 0.61
VPS39-210ENST00000568357 CLUAP1Q96AJ1 413 aa18.85■□□□□ 0.61
VPS39-210ENST00000568357 GMLQ99445 158 aa18.85■□□□□ 0.61
VPS39-210ENST00000568357 MXD3Q9BW11 206 aa18.85■□□□□ 0.61
VPS39-210ENST00000568357 PGAP2Q9UHJ9 254 aa18.85■□□□□ 0.61
VPS39-210ENST00000568357 TBC1D10BQ4KMP7 808 aaPredicted RBP18.84■□□□□ 0.61
VPS39-210ENST00000568357 RBM26Q5T8P6 1007 aaKnown RBP18.84■□□□□ 0.61
VPS39-210ENST00000568357 AGBL3Q8NEM8 1001 aa18.84■□□□□ 0.61
VPS39-210ENST00000568357 BEGAINQ9BUH8 593 aa18.84■□□□□ 0.61
VPS39-210ENST00000568357 MCOLN1Q9GZU1 580 aa18.84■□□□□ 0.61
VPS39-210ENST00000568357 CD209Q9NNX6 404 aa18.84■□□□□ 0.61
VPS39-210ENST00000568357 LRRFIP2Q9Y608 721 aaKnown RBP18.84■□□□□ 0.61
VPS39-210ENST00000568357 SCN9AQ15858 1988 aa18.84■□□□□ 0.61
VPS39-210ENST00000568357 DACT2Q5SW24 774 aa18.83■□□□□ 0.6
VPS39-210ENST00000568357 ZKSCAN2Q63HK3 967 aa18.83■□□□□ 0.6
VPS39-210ENST00000568357 MROH5Q6ZUA9 1318 aa18.82■□□□□ 0.6
VPS39-210ENST00000568357 PTPN12Q05209 780 aaKnown RBP18.82■□□□□ 0.6
VPS39-210ENST00000568357 STRIP1Q5VSL9 837 aa18.82■□□□□ 0.6
VPS39-210ENST00000568357 ZC3H15Q8WU90 426 aaKnown RBP18.82■□□□□ 0.6
VPS39-210ENST00000568357 TRAF5O00463 557 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 AOC2O75106 756 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 USP17L8P0C7I0 530 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 ECE1P42892 770 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 ZNF280AP59817 542 aaPredicted RBP18.81■□□□□ 0.6
VPS39-210ENST00000568357 UBE4AQ14139 1066 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 TTLL5Q6EMB2 1281 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 TMEM57Q8N5G2 664 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 FBXW7Q969H0 707 aa18.81■□□□□ 0.6
VPS39-210ENST00000568357 IL1R1P14778 569 aa18.8■□□□□ 0.6
VPS39-210ENST00000568357 GTF2IP78347 998 aa18.8■□□□□ 0.6
VPS39-210ENST00000568357 METTL24Q5JXM2 366 aa18.8■□□□□ 0.6
VPS39-210ENST00000568357 VGLL2Q8N8G2 317 aa18.8■□□□□ 0.6
VPS39-210ENST00000568357 GLIS2Q9BZE0 524 aaPredicted RBP18.8■□□□□ 0.6
VPS39-210ENST00000568357 HDAC5Q9UQL6 1122 aa18.8■□□□□ 0.6
VPS39-210ENST00000568357 EYA2O00167 538 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 PDE8BO95263 885 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 GNAI3P08754 354 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 GYG1P46976 350 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 KIF4BQ2VIQ3 1234 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 ZNF804AQ7Z570 1209 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 FAM84BQ96KN1 310 aaPredicted RBP18.79■□□□□ 0.6
VPS39-210ENST00000568357 ZNF609O15014 1411 aa18.79■□□□□ 0.6
VPS39-210ENST00000568357 CST9Q5W186 159 aa18.78■□□□□ 0.6
VPS39-210ENST00000568357 DLK2Q6UY11 383 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms