RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 FMR1Q06787 632 aaKnown RBP eCLIP23.58■■□□□ 1.37
SMPD3-209ENST00000567223 KIF4BQ2VIQ3 1234 aa23.58■■□□□ 1.37
SMPD3-209ENST00000567223 TBC1D10BQ4KMP7 808 aaPredicted RBP23.58■■□□□ 1.37
SMPD3-209ENST00000567223 EPHA10Q5JZY3 1008 aa23.58■■□□□ 1.37
SMPD3-209ENST00000567223 LMBR1LQ6UX01 489 aa23.58■■□□□ 1.37
SMPD3-209ENST00000567223 SAPCD2Q86UD0 394 aa23.58■■□□□ 1.37
SMPD3-209ENST00000567223 SSH1Q8WYL5 1049 aa23.58■■□□□ 1.37
SMPD3-209ENST00000567223 ECE1P42892 770 aa23.57■■□□□ 1.36
SMPD3-209ENST00000567223 BRPF1P55201 1214 aaPredicted RBP23.57■■□□□ 1.36
SMPD3-209ENST00000567223 CCDC57Q2TAC2 916 aa23.57■■□□□ 1.36
SMPD3-209ENST00000567223 DACT2Q5SW24 774 aa23.57■■□□□ 1.36
SMPD3-209ENST00000567223 SLC4A10Q6U841 1118 aa23.57■■□□□ 1.36
SMPD3-209ENST00000567223 WDR33Q9C0J8 1336 aaKnown RBP23.57■■□□□ 1.36
SMPD3-209ENST00000567223 CELF2O95319 508 aaKnown RBP23.56■■□□□ 1.36
SMPD3-209ENST00000567223 USP17L8P0C7I0 530 aa23.56■■□□□ 1.36
SMPD3-209ENST00000567223 RABL6Q3YEC7 729 aaPredicted RBP23.56■■□□□ 1.36
SMPD3-209ENST00000567223 TXNRD3Q86VQ6 643 aa23.56■■□□□ 1.36
SMPD3-209ENST00000567223 KAZALD1Q96I82 304 aa23.56■■□□□ 1.36
SMPD3-209ENST00000567223 PITPNM2Q9BZ72 1349 aa23.56■■□□□ 1.36
SMPD3-209ENST00000567223 DCPSQ96C86 337 aaKnown RBP23.55■■□□□ 1.36
SMPD3-209ENST00000567223 WBP1LQ9NX94 342 aa23.55■■□□□ 1.36
SMPD3-209ENST00000567223 NBPF7P0C2Y1 421 aaPredicted RBP23.54■■□□□ 1.36
SMPD3-209ENST00000567223 KRT26Q7Z3Y9 468 aa23.54■■□□□ 1.36
SMPD3-209ENST00000567223 CDCA7LQ96GN5 454 aa23.54■■□□□ 1.36
SMPD3-209ENST00000567223 MAP2K1Q02750 393 aaPredicted RBP23.53■■□□□ 1.36
SMPD3-209ENST00000567223 LDHAL6AQ6ZMR3 332 aa23.53■■□□□ 1.36
SMPD3-209ENST00000567223 MYOZ2Q9NPC6 264 aa23.53■■□□□ 1.36
SMPD3-209ENST00000567223 MAP2K2P36507 400 aa23.52■■□□□ 1.36
SMPD3-209ENST00000567223 KCNJ4P48050 445 aa23.52■■□□□ 1.36
SMPD3-209ENST00000567223 COL13A1Q5TAT6 717 aaPredicted RBP23.52■■□□□ 1.36
SMPD3-209ENST00000567223 USP48Q86UV5 1035 aa23.52■■□□□ 1.36
SMPD3-209ENST00000567223 SUCLG2Q96I99 432 aa23.52■■□□□ 1.36
SMPD3-209ENST00000567223 CAPNS2Q96L46 248 aa23.52■■□□□ 1.36
SMPD3-209ENST00000567223 CHMP3Q9Y3E7 222 aa23.52■■□□□ 1.36
SMPD3-209ENST00000567223 KLRK1P26718 216 aa23.51■■□□□ 1.35
SMPD3-209ENST00000567223 OGFOD1Q8N543 542 aa23.51■■□□□ 1.35
SMPD3-209ENST00000567223 CD209Q9NNX6 404 aa23.51■■□□□ 1.35
SMPD3-209ENST00000567223 GGA3Q9NZ52 723 aa23.51■■□□□ 1.35
SMPD3-209ENST00000567223 IL1R1P14778 569 aa23.5■■□□□ 1.35
SMPD3-209ENST00000567223 TTLL5Q6EMB2 1281 aa23.5■■□□□ 1.35
SMPD3-209ENST00000567223 SULF1Q8IWU6 871 aa23.5■■□□□ 1.35
SMPD3-209ENST00000567223 FKBP1AP62942 108 aaKnown RBP23.49■■□□□ 1.35
SMPD3-209ENST00000567223 TAF7LQ5H9L4 462 aa23.49■■□□□ 1.35
SMPD3-209ENST00000567223 RBM26Q5T8P6 1007 aaKnown RBP23.49■■□□□ 1.35
SMPD3-209ENST00000567223 USP44Q9H0E7 712 aa23.49■■□□□ 1.35
SMPD3-209ENST00000567223 PRDM10Q9NQV6 1147 aa23.49■■□□□ 1.35
SMPD3-209ENST00000567223 FOXN1O15353 648 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 TAF5LO75529 589 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 UBE4AQ14139 1066 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 SCARF1Q14162 830 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 CYP4F22Q6NT55 531 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 ZNF804AQ7Z570 1209 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 AIDAQ96BJ3 306 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 BICC1Q9H694 974 aaKnown RBP23.48■■□□□ 1.35
SMPD3-209ENST00000567223 CNNM1Q9NRU3 951 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 SMC4Q9NTJ3 1288 aa23.48■■□□□ 1.35
SMPD3-209ENST00000567223 CTCFP49711 727 aaPredicted RBP23.47■■□□□ 1.35
SMPD3-209ENST00000567223 ANKRD44Q8N8A2 993 aa23.47■■□□□ 1.35
SMPD3-209ENST00000567223 ZNF594Q96JF6 807 aaPredicted RBP23.47■■□□□ 1.35
SMPD3-209ENST00000567223 RIPOR2Q9Y4F9 1068 aa23.47■■□□□ 1.35
SMPD3-209ENST00000567223 MROH5Q6ZUA9 1318 aa23.47■■□□□ 1.35
SMPD3-209ENST00000567223 POLR2AP24928 1970 aaKnown RBP23.47■■□□□ 1.35
SMPD3-209ENST00000567223 ADM5C9JUS6 153 aa23.46■■□□□ 1.35
SMPD3-209ENST00000567223 ANGEL2Q5VTE6 544 aaKnown RBP23.46■■□□□ 1.35
SMPD3-209ENST00000567223 ASTN2O75129 1339 aaPredicted RBP23.45■■□□□ 1.34
SMPD3-209ENST00000567223 FKBP1BP68106 108 aa23.45■■□□□ 1.34
SMPD3-209ENST00000567223 HELBQ8NG08 1087 aaPredicted RBP23.45■■□□□ 1.34
SMPD3-209ENST00000567223 ZNF408Q9H9D4 720 aa23.45■■□□□ 1.34
SMPD3-209ENST00000567223 GBA2Q9HCG7 927 aaPredicted RBP23.45■■□□□ 1.34
SMPD3-209ENST00000567223 HDAC9Q9UKV0 1011 aa23.45■■□□□ 1.34
SMPD3-209ENST00000567223 SNAP23O00161 211 aa23.44■■□□□ 1.34
SMPD3-209ENST00000567223 WNT10BO00744 389 aa23.44■■□□□ 1.34
SMPD3-209ENST00000567223 GTF2IP78347 998 aa23.44■■□□□ 1.34
SMPD3-209ENST00000567223 C2orf69Q8N8R5 385 aa23.44■■□□□ 1.34
SMPD3-209ENST00000567223 MTMR14Q8NCE2 650 aa23.44■■□□□ 1.34
SMPD3-209ENST00000567223 ARHGAP45Q92619 1136 aa23.44■■□□□ 1.34
SMPD3-209ENST00000567223 ZBED3Q96IU2 234 aaPredicted RBP23.44■■□□□ 1.34
SMPD3-209ENST00000567223 SASH1O94885 1247 aa23.43■■□□□ 1.34
SMPD3-209ENST00000567223 HUNKP57058 714 aa23.43■■□□□ 1.34
SMPD3-209ENST00000567223 NOGQ13253 232 aa23.43■■□□□ 1.34
SMPD3-209ENST00000567223 CDCA5Q96FF9 252 aa23.43■■□□□ 1.34
SMPD3-209ENST00000567223 MXD3Q9BW11 206 aa23.43■■□□□ 1.34
SMPD3-209ENST00000567223 API5Q9BZZ5 524 aaKnown RBP23.43■■□□□ 1.34
SMPD3-209ENST00000567223 FAM205AQ6ZU69 1335 aa23.42■■□□□ 1.34
SMPD3-209ENST00000567223 CA12O43570 354 aa23.42■■□□□ 1.34
SMPD3-209ENST00000567223 PAXIP1Q6ZW49 1069 aaPredicted RBP23.42■■□□□ 1.34
SMPD3-209ENST00000567223 PAPPA2Q9BXP8 1791 aa23.42■■□□□ 1.34
SMPD3-209ENST00000567223 COL1A1P02452 1464 aaPredicted RBP23.42■■□□□ 1.34
SMPD3-209ENST00000567223 KIF16BQ96L93 1317 aa23.41■■□□□ 1.34
SMPD3-209ENST00000567223 RARSP54136 660 aaKnown RBP23.41■■□□□ 1.34
SMPD3-209ENST00000567223 NBPF9Q3BBW0 867 aa23.41■■□□□ 1.34
SMPD3-209ENST00000567223 DLK2Q6UY11 383 aa23.41■■□□□ 1.34
SMPD3-209ENST00000567223 VGLL2Q8N8G2 317 aa23.41■■□□□ 1.34
SMPD3-209ENST00000567223 TDRD7Q8NHU6 1098 aaKnown RBP23.41■■□□□ 1.34
SMPD3-209ENST00000567223 RGMBQ6NW40 437 aa23.4■■□□□ 1.34
SMPD3-209ENST00000567223 KIAA0825Q8IV33 1275 aa23.4■■□□□ 1.34
SMPD3-209ENST00000567223 CERS5Q8N5B7 392 aa23.4■■□□□ 1.34
SMPD3-209ENST00000567223 FBXW7Q969H0 707 aa23.4■■□□□ 1.34
SMPD3-209ENST00000567223 CCDC102AQ96A19 550 aa23.4■■□□□ 1.34
SMPD3-209ENST00000567223 PUS3Q9BZE2 481 aaKnown RBP23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms