RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 MICALL1Q8N3F8 863 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 HINFPQ9BQA5 517 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 ZNF777Q9ULD5 760 aaPredicted RBP8.42□□□□□ -1.06
VPS35-204ENST00000563884 STARD13Q9Y3M8 1113 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 NKTRP30414 1462 aaKnown RBP8.42□□□□□ -1.06
VPS35-204ENST00000563884 PLEKHH2Q8IVE3 1493 aa8.41□□□□□ -1.06
VPS35-204ENST00000563884 MIA2Q96PC5 1412 aa8.41□□□□□ -1.06
VPS35-204ENST00000563884 MSH6P52701 1360 aa8.41□□□□□ -1.06
VPS35-204ENST00000563884 C8orf86Q6ZUL3 223 aa8.41□□□□□ -1.06
VPS35-204ENST00000563884 GAS2L2Q8NHY3 880 aa8.41□□□□□ -1.06
VPS35-204ENST00000563884 C2orf49Q9BVC5 232 aaPredicted RBP8.41□□□□□ -1.06
VPS35-204ENST00000563884 IGFLR1Q9H665 355 aa8.41□□□□□ -1.06
VPS35-204ENST00000563884 FAM229AH3BQW9 127 aa8.4□□□□□ -1.06
VPS35-204ENST00000563884 RBM6P78332 1123 aaKnown RBP8.4□□□□□ -1.06
VPS35-204ENST00000563884 TRIM28Q13263 835 aaKnown RBP8.4□□□□□ -1.06
VPS35-204ENST00000563884 KANK4Q5T7N3 995 aaPredicted RBP8.4□□□□□ -1.06
VPS35-204ENST00000563884 BTLAQ7Z6A9 289 aa8.4□□□□□ -1.06
VPS35-204ENST00000563884 STAG2Q8N3U4 1231 aa8.4□□□□□ -1.06
VPS35-204ENST00000563884 UBE2OQ9C0C9 1292 aaKnown RBP8.4□□□□□ -1.06
VPS35-204ENST00000563884 SEMA6BQ9H3T3 888 aa8.4□□□□□ -1.06
VPS35-204ENST00000563884 PRDM6Q9NQX0 595 aa8.4□□□□□ -1.06
VPS35-204ENST00000563884 LRRIQ1Q96JM4 1722 aa8.4□□□□□ -1.07
VPS35-204ENST00000563884 FMN1Q68DA7 1419 aa8.39□□□□□ -1.07
VPS35-204ENST00000563884 TMEM94Q12767 1356 aa8.39□□□□□ -1.07
VPS35-204ENST00000563884 LGR5O75473 907 aa8.39□□□□□ -1.07
VPS35-204ENST00000563884 EP400Q96L91 3159 aa8.39□□□□□ -1.07
VPS35-204ENST00000563884 PRDM15P57071 1507 aaPredicted RBP8.39□□□□□ -1.07
VPS35-204ENST00000563884 COL9A3Q14050 684 aaPredicted RBP8.38□□□□□ -1.07
VPS35-204ENST00000563884 CFAP70Q5T0N1 1121 aa8.38□□□□□ -1.07
VPS35-204ENST00000563884 SLIT1O75093 1534 aa8.38□□□□□ -1.07
VPS35-204ENST00000563884 CFAP65Q6ZU64 1925 aaKnown RBP8.37□□□□□ -1.07
VPS35-204ENST00000563884 AFF2P51816 1311 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 LILRB5O75023 590 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 YY1P25490 414 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 DPYDQ12882 1025 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 TRAPPC3LQ5T215 181 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 PNMA5Q96PV4 448 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 NACC1Q96RE7 527 aa8.37□□□□□ -1.07
VPS35-204ENST00000563884 NID1P14543 1247 aa8.36□□□□□ -1.07
VPS35-204ENST00000563884 RTN1Q16799 776 aa8.36□□□□□ -1.07
VPS35-204ENST00000563884 CRTC2Q53ET0 693 aaPredicted RBP8.36□□□□□ -1.07
VPS35-204ENST00000563884 C20orf204Q6ZNR8 217 aa8.36□□□□□ -1.07
VPS35-204ENST00000563884 Q8N3U1 123 aa8.36□□□□□ -1.07
VPS35-204ENST00000563884 DIP2AQ14689 1571 aa8.35□□□□□ -1.07
VPS35-204ENST00000563884 ARHGAP23Q9P227 1491 aa8.35□□□□□ -1.07
VPS35-204ENST00000563884 PTK7Q13308 1070 aa8.35□□□□□ -1.07
VPS35-204ENST00000563884 GRIK4Q16099 956 aa8.35□□□□□ -1.07
VPS35-204ENST00000563884 SLC6A14Q9UN76 642 aa8.35□□□□□ -1.07
VPS35-204ENST00000563884 KIAA1107Q9UPP5 1409 aa8.35□□□□□ -1.07
VPS35-204ENST00000563884 CCDC18Q5T9S5 1454 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 LMOD1P29536 600 aaPredicted RBP8.34□□□□□ -1.07
VPS35-204ENST00000563884 NUDT8Q8WV74 236 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 VRTNQ9H8Y1 702 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 EFCC1Q9HA90 598 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 JPH1Q9HDC5 661 aaPredicted RBP8.34□□□□□ -1.07
VPS35-204ENST00000563884 SLAIN2Q9P270 581 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.34□□□□□ -1.07
VPS35-204ENST00000563884 EID1Q9Y6B2 187 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 SPHKAPQ2M3C7 1700 aa8.34□□□□□ -1.07
VPS35-204ENST00000563884 GPATCH8Q9UKJ3 1502 aaKnown RBP8.34□□□□□ -1.08
VPS35-204ENST00000563884 CHD2O14647 1828 aaKnown RBP8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L15C9J2P7 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L10C9JJH3 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L13C9JLJ4 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L12C9JPN9 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L11C9JVI0 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L21D6R901 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L18D6R9N7 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L22D6RA61 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L17D6RBQ6 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L19D6RCP7 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L20D6RJB6 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 TGFBR3LH3BV60 316 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 UNC13BO14795 1591 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 EPB42P16452 691 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 IGFBP4P22692 258 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 USP17L24Q0WX57 530 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 CCINQ13939 588 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 IER5Q5VY09 327 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 ANKMY2Q8IV38 441 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 GSX2Q9BZM3 304 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 TPSG1Q9NRR2 321 aa8.33□□□□□ -1.08
VPS35-204ENST00000563884 DNAJB12Q9NXW2 375 aaKnown RBP8.33□□□□□ -1.08
VPS35-204ENST00000563884 WASHC2CQ9Y4E1 1318 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 RTEL1-TNFRSF6BF6WH68 1400 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 FAM196BA6NMK8 535 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 NFKB1P19838 968 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 ITGB7P26010 798 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 SRPK2P78362 688 aaKnown RBP8.32□□□□□ -1.08
VPS35-204ENST00000563884 RSPO4Q2I0M5 234 aaPredicted RBP8.32□□□□□ -1.08
VPS35-204ENST00000563884 QTRT2Q9H974 415 aaKnown RBP8.32□□□□□ -1.08
VPS35-204ENST00000563884 ERVK-7P63135 1459 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 CAMSAP2Q08AD1 1489 aa8.32□□□□□ -1.08
VPS35-204ENST00000563884 BLMP54132 1417 aaPredicted RBP8.31□□□□□ -1.08
VPS35-204ENST00000563884 KCNA6P17658 529 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 RANGAP1P46060 587 aaPredicted RBP8.31□□□□□ -1.08
VPS35-204ENST00000563884 RAC1P63000 192 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 PSAPL1Q6NUJ1 521 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 VTI1AQ96AJ9 217 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 KLK14Q9P0G3 267 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms