RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 SLIT2O94813 1529 aa21.68■■□□□ 1.06
RAB40C-206ENST00000561781 VPS37CA5D8V6 355 aaPredicted RBP21.67■■□□□ 1.06
RAB40C-206ENST00000561781 PSDA5PKW4 1024 aaPredicted RBP21.67■■□□□ 1.06
RAB40C-206ENST00000561781 LARGE1O95461 756 aa21.67■■□□□ 1.06
RAB40C-206ENST00000561781 SNX14Q9Y5W7 946 aa21.67■■□□□ 1.06
RAB40C-206ENST00000561781 ARFGAP3Q9NP61 516 aa21.67■■□□□ 1.06
RAB40C-206ENST00000561781 RGS17Q9UGC6 210 aaPredicted RBP21.67■■□□□ 1.06
RAB40C-206ENST00000561781 CCDC9Q9Y3X0 531 aaKnown RBP21.67■■□□□ 1.06
RAB40C-206ENST00000561781 COL14A1Q05707 1796 aaKnown RBP21.66■■□□□ 1.06
RAB40C-206ENST00000561781 TADA3O75528 432 aa21.66■■□□□ 1.06
RAB40C-206ENST00000561781 EVA1CP58658 441 aa21.66■■□□□ 1.06
RAB40C-206ENST00000561781 CCDC34Q96HJ3 373 aa21.66■■□□□ 1.06
RAB40C-206ENST00000561781 DNAJC25Q9H1X3 360 aa21.66■■□□□ 1.06
RAB40C-206ENST00000561781 EPB41L2O43491 1005 aaKnown RBP21.66■■□□□ 1.06
RAB40C-206ENST00000561781 CCDC83Q8IWF9 413 aa21.66■■□□□ 1.06
RAB40C-206ENST00000561781 PPP1R13BQ96KQ4 1090 aa21.66■■□□□ 1.06
RAB40C-206ENST00000561781 CCDC189A1A4V9 331 aa21.65■■□□□ 1.06
RAB40C-206ENST00000561781 FNBP4Q8N3X1 1017 aaPredicted RBP21.65■■□□□ 1.06
RAB40C-206ENST00000561781 LRRCC1Q9C099 1032 aa21.65■■□□□ 1.06
RAB40C-206ENST00000561781 PHLPP2Q6ZVD8 1323 aa21.65■■□□□ 1.06
RAB40C-206ENST00000561781 CDK12Q9NYV4 1490 aaPredicted RBP21.65■■□□□ 1.06
RAB40C-206ENST00000561781 KCNJ6P48051 423 aa21.65■■□□□ 1.06
RAB40C-206ENST00000561781 NLRP2Q9NX02 1062 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 RGPD2P0DJD1 1756 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 KRT85P78386 507 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 DCTN1Q14203 1278 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 DNAJC21Q5F1R6 531 aaKnown RBP21.64■■□□□ 1.05
RAB40C-206ENST00000561781 NBPF6Q5VWK0 638 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 TOM1L2Q6ZVM7 507 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 GPR161Q8N6U8 529 aaKnown RBP21.64■■□□□ 1.05
RAB40C-206ENST00000561781 DNAAF4Q8WXU2 420 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 NBPF4Q96M43 638 aa21.64■■□□□ 1.05
RAB40C-206ENST00000561781 GOLIM4O00461 696 aa21.63■■□□□ 1.05
RAB40C-206ENST00000561781 CALRP27797 417 aaKnown RBP21.63■■□□□ 1.05
RAB40C-206ENST00000561781 RASEFQ8IZ41 740 aa21.63■■□□□ 1.05
RAB40C-206ENST00000561781 CLSTN2Q9H4D0 955 aa21.63■■□□□ 1.05
RAB40C-206ENST00000561781 CPA1P15085 419 aa21.63■■□□□ 1.05
RAB40C-206ENST00000561781 FUT8Q9BYC5 575 aa21.63■■□□□ 1.05
RAB40C-206ENST00000561781 PPP1R12AO14974 1030 aaPredicted RBP21.62■■□□□ 1.05
RAB40C-206ENST00000561781 USP8P40818 1118 aa21.62■■□□□ 1.05
RAB40C-206ENST00000561781 E4F1Q66K89 784 aaPredicted RBP21.62■■□□□ 1.05
RAB40C-206ENST00000561781 TADA2BQ86TJ2 420 aa21.62■■□□□ 1.05
RAB40C-206ENST00000561781 TACO1Q9BSH4 297 aaKnown RBP21.62■■□□□ 1.05
RAB40C-206ENST00000561781 PDRG1Q9NUG6 133 aa21.62■■□□□ 1.05
RAB40C-206ENST00000561781 RBM28Q9NW13 759 aaKnown RBP21.62■■□□□ 1.05
RAB40C-206ENST00000561781 DLG5Q8TDM6 1919 aa21.62■■□□□ 1.05
RAB40C-206ENST00000561781 NRAPQ86VF7 1730 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 A0A087WUV0 522 aaPredicted RBP21.61■■□□□ 1.05
RAB40C-206ENST00000561781 LRRFIP1Q32MZ4 808 aaKnown RBP21.61■■□□□ 1.05
RAB40C-206ENST00000561781 FAM173BQ6P4H8 233 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 USP16Q9Y5T5 823 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 CCP110O43303 1012 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 DHX8Q14562 1220 aaKnown RBP21.61■■□□□ 1.05
RAB40C-206ENST00000561781 GORABQ5T7V8 394 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 EYA1Q99502 592 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 FAM107BQ9H098 131 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 TTC41PQ6P2S7 1318 aa21.61■■□□□ 1.05
RAB40C-206ENST00000561781 IL13P35225 146 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 ETF1P62495 437 aaKnown RBP21.6■■□□□ 1.05
RAB40C-206ENST00000561781 LRCH2Q5VUJ6 765 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 HYPKQ9NX55 129 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 IMPACTQ9P2X3 320 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 GOLGA6L4A6NEF3 574 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 NRDCO43847 1150 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 EVCP57679 992 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 MAP2K1Q02750 393 aaPredicted RBP21.6■■□□□ 1.05
RAB40C-206ENST00000561781 FERMT3Q86UX7 667 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 STAP2Q9UGK3 403 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 DNAI1Q9UI46 699 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 WDR17Q8IZU2 1322 aa21.6■■□□□ 1.05
RAB40C-206ENST00000561781 SMC2O95347 1197 aa21.59■■□□□ 1.05
RAB40C-206ENST00000561781 IQCB1Q15051 598 aa21.59■■□□□ 1.05
RAB40C-206ENST00000561781 JAKMIP3Q5VZ66 844 aa21.59■■□□□ 1.05
RAB40C-206ENST00000561781 POTEAQ6S8J7 498 aa21.59■■□□□ 1.05
RAB40C-206ENST00000561781 OSBPL5Q9H0X9 879 aaPredicted RBP21.59■■□□□ 1.05
RAB40C-206ENST00000561781 H3BQF6 201 aa21.58■■□□□ 1.05
RAB40C-206ENST00000561781 HOMER1Q86YM7 354 aa21.58■■□□□ 1.05
RAB40C-206ENST00000561781 QTRT2Q9H974 415 aaKnown RBP21.58■■□□□ 1.05
RAB40C-206ENST00000561781 FOXR1Q6PIV2 292 aa21.58■■□□□ 1.04
RAB40C-206ENST00000561781 NR1I2O75469 434 aa21.57■■□□□ 1.04
RAB40C-206ENST00000561781 SLC4A10Q6U841 1118 aa21.57■■□□□ 1.04
RAB40C-206ENST00000561781 CDC37L1Q7L3B6 337 aa21.57■■□□□ 1.04
RAB40C-206ENST00000561781 CCDC150Q8NCX0 1101 aa21.57■■□□□ 1.04
RAB40C-206ENST00000561781 VPS18Q9P253 973 aa21.57■■□□□ 1.04
RAB40C-206ENST00000561781 EIF5P55010 431 aaKnown RBP21.57■■□□□ 1.04
RAB40C-206ENST00000561781 ST3GAL1Q11201 340 aa21.57■■□□□ 1.04
RAB40C-206ENST00000561781 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.57■■□□□ 1.04
RAB40C-206ENST00000561781 MAP2K7O14733 419 aa21.56■■□□□ 1.04
RAB40C-206ENST00000561781 SGSM2O43147 1006 aa21.56■■□□□ 1.04
RAB40C-206ENST00000561781 MNAT1P51948 309 aa21.56■■□□□ 1.04
RAB40C-206ENST00000561781 FAM98CQ17RN3 349 aaKnown RBP21.56■■□□□ 1.04
RAB40C-206ENST00000561781 SYTL4Q96C24 671 aaPredicted RBP21.56■■□□□ 1.04
RAB40C-206ENST00000561781 CARD6Q9BX69 1037 aa21.56■■□□□ 1.04
RAB40C-206ENST00000561781 LSG1Q9H089 658 aaKnown RBP21.56■■□□□ 1.04
RAB40C-206ENST00000561781 MAP4K4O95819 1239 aaPredicted RBP21.56■■□□□ 1.04
RAB40C-206ENST00000561781 MSL3Q8N5Y2 521 aaKnown RBP21.56■■□□□ 1.04
RAB40C-206ENST00000561781 RNF217Q8TC41 542 aa21.56■■□□□ 1.04
RAB40C-206ENST00000561781 SCAND2PQ9GZW5 306 aaPredicted RBP21.56■■□□□ 1.04
RAB40C-206ENST00000561781 NWD2Q9ULI1 1742 aa21.55■■□□□ 1.04
RAB40C-206ENST00000561781 KIF3CO14782 793 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms