RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 USPL1Q5W0Q7 1092 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 CHST3Q7LGC8 479 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 IQSEC3Q9UPP2 1182 aaPredicted RBP16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 AFF2P51816 1311 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 IDH1O75874 414 aaKnown RBP16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 TOB2Q14106 344 aaPredicted RBP16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 TBC1D9BQ66K14 1250 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 CCDC102BQ68D86 513 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 FBXO3Q9UK99 471 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 SMC3Q9UQE7 1217 aa16.81■□□□□ 0.28
CARMIL3-203ENST00000560349 LMBRD1Q9NUN5 540 aa16.8■□□□□ 0.28
CARMIL3-203ENST00000560349 CCNL1Q9UK58 526 aaPredicted RBP16.8■□□□□ 0.28
CARMIL3-203ENST00000560349 PSMA5P28066 241 aa16.8■□□□□ 0.28
CARMIL3-203ENST00000560349 GJB2P29033 226 aa16.8■□□□□ 0.28
CARMIL3-203ENST00000560349 MRE11P49959 708 aa16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 NEK1Q96PY6 1258 aa16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 PIH1D3Q9NQM4 214 aaKnown RBP16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 NSFL1CQ9UNZ2 370 aaKnown RBP16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 U3KPZ7 1027 aaPredicted RBP16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 GTF2E1P29083 439 aaPredicted RBP16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 PARP10Q53GL7 1025 aa16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 CLEC17AQ6ZS10 378 aa16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 GJD4Q96KN9 370 aaPredicted RBP16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 HELLSQ9NRZ9 838 aa16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 RBM27Q9P2N5 1060 aaKnown RBP16.79■□□□□ 0.28
CARMIL3-203ENST00000560349 FOXP2O15409 715 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 SYT1P21579 422 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 CCDC152Q4G0S7 254 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 CERKQ8TCT0 537 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 BCL2L12Q9HB09 334 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 RFX7Q2KHR2 1363 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 PUM3Q15397 648 aaKnown RBP16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 CAVIN1Q6NZI2 390 aaKnown RBP16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 SLC51AQ86UW1 340 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 HMG20BQ9P0W2 317 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 ZNF652Q9Y2D9 606 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 TAF1P21675 1872 aa16.78■□□□□ 0.28
CARMIL3-203ENST00000560349 SLC9C2Q5TAH2 1124 aa16.77■□□□□ 0.28
CARMIL3-203ENST00000560349 Q6ZUG5 572 aa16.77■□□□□ 0.28
CARMIL3-203ENST00000560349 GRPEL1Q9HAV7 217 aa16.77■□□□□ 0.28
CARMIL3-203ENST00000560349 SPATA31A6Q5VVP1 1343 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 BCAMP50895 628 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 FGD1P98174 961 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 GAS2L3Q86XJ1 694 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 BRF1Q92994 677 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 WWC3Q9ULE0 1092 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 NAP1L2Q9ULW6 460 aaPredicted RBP16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 SPEF2Q9C093 1822 aa16.77■□□□□ 0.27
CARMIL3-203ENST00000560349 ABCC12Q96J65 1359 aa16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 VPS37CA5D8V6 355 aaPredicted RBP16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 HSP90B1P14625 803 aaKnown RBP16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 GPT2Q8TD30 523 aa16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 COL5A3P25940 1745 aaPredicted RBP16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 IGHMBP2P38935 993 aaKnown RBP16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 RASGRF1Q13972 1273 aa16.76■□□□□ 0.27
CARMIL3-203ENST00000560349 STX6O43752 255 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 CHRNDQ07001 517 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 SEPT12Q8IYM1 358 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 LPIN2Q92539 896 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 GPHNQ9NQX3 736 aaPredicted RBP16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 MYO5AQ9Y4I1 1855 aaKnown RBP16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 BTAF1O14981 1849 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 DDX60Q8IY21 1712 aaKnown RBP16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 MROH5Q6ZUA9 1318 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 GPAA1O43292 621 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 FGFR2P21802 821 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 FERMT3Q86UX7 667 aa16.75■□□□□ 0.27
CARMIL3-203ENST00000560349 E7EWF7 191 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 JAK2O60674 1132 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 FOSBP53539 338 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 DSCC1Q9BVC3 393 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 DENND2AQ9ULE3 1009 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 WDR33Q9C0J8 1336 aaKnown RBP16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 RREB1Q92766 1687 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 TSGA10IPQ3SY00 556 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 CELF1Q92879 486 aaKnown RBP16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 SH2B1Q9NRF2 756 aaPredicted RBP16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 AKAP11Q9UKA4 1901 aa16.74■□□□□ 0.27
CARMIL3-203ENST00000560349 FGAP02671 866 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 SLC5A1P13866 664 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 KLHL40Q2TBA0 621 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 APPBP2Q92624 585 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 ZSCAN31Q96LW9 406 aaPredicted RBP16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 CNPY2Q9Y2B0 182 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 ZNF532Q9HCE3 1301 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 GADD45BO75293 160 aaPredicted RBP16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 ZPR1O75312 459 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 APOBRQ0VD83 1088 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 KRT32Q14532 448 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 FAM173BQ6P4H8 233 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 RAB11FIP4Q86YS3 637 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 ARHGEF1Q92888 912 aaKnown RBP16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 DDX11Q96FC9 970 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 CNTNAP4Q9C0A0 1308 aa16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 ZSCAN22P10073 491 aaPredicted RBP16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 SKOR2Q2VWA4 1001 aaPredicted RBP16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 NBPF5PQ86XG9 351 aaPredicted RBP16.73■□□□□ 0.27
CARMIL3-203ENST00000560349 SPATA5Q8NB90 893 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms