RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 PI16Q6UXB8 463 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 LUZP1Q86V48 1076 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 XAGE2Q96GT9 111 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.85□□□□□ -0.51
LRRC28-216ENST00000559819 RBM10P98175 930 aaKnown RBP11.85□□□□□ -0.51
LRRC28-216ENST00000559819 TCIRG1Q13488 830 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 GORABQ5T7V8 394 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 TMOD3Q9NYL9 352 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 LAMA4Q16363 1823 aa11.85□□□□□ -0.51
LRRC28-216ENST00000559819 SOS2Q07890 1332 aaPredicted RBP11.85□□□□□ -0.51
LRRC28-216ENST00000559819 SHANK3Q9BYB0 1731 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 UQCRHLA0A096LP55 91 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 UQCRHP07919 91 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 HSP90AA2PQ14568 343 aaPredicted RBP11.84□□□□□ -0.51
LRRC28-216ENST00000559819 ANO6Q4KMQ2 910 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 CLSTN2Q9H4D0 955 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 FOXP2O15409 715 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 GPTP24298 496 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 WASHC4Q2M389 1173 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 FAM200AQ8TCP9 573 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 SLAIN2Q9P270 581 aa11.84□□□□□ -0.51
LRRC28-216ENST00000559819 TOGARAM1Q9Y4F4 1720 aa11.83□□□□□ -0.51
LRRC28-216ENST00000559819 HMGB1P09429 215 aaKnown RBP11.83□□□□□ -0.52
LRRC28-216ENST00000559819 ADD1P35611 737 aaKnown RBP11.83□□□□□ -0.52
LRRC28-216ENST00000559819 ZAP70P43403 619 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 TAF7LQ5H9L4 462 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 RAB11FIP4Q86YS3 637 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 PIGBQ92521 554 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 CBX8Q9HC52 389 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 PDIA3P30101 505 aaKnown RBP11.83□□□□□ -0.52
LRRC28-216ENST00000559819 HLFQ16534 295 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 CCDC158Q5M9N0 1113 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 KCNF1Q9H3M0 494 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 ATG3Q9NT62 314 aa11.83□□□□□ -0.52
LRRC28-216ENST00000559819 KIF6Q6ZMV9 814 aa11.82□□□□□ -0.52
LRRC28-216ENST00000559819 PIBF1Q8WXW3 757 aa11.82□□□□□ -0.52
LRRC28-216ENST00000559819 LLPHQ9BRT6 129 aaKnown RBP11.82□□□□□ -0.52
LRRC28-216ENST00000559819 AGXT2Q9BYV1 514 aa11.82□□□□□ -0.52
LRRC28-216ENST00000559819 DDX19AQ9NUU7 478 aaKnown RBP11.82□□□□□ -0.52
LRRC28-216ENST00000559819 NOLC1Q14978 699 aaKnown RBP eCLIP11.82□□□□□ -0.52
LRRC28-216ENST00000559819 DNTTIP2Q5QJE6 756 aaKnown RBP11.82□□□□□ -0.52
LRRC28-216ENST00000559819 PUS7LQ9H0K6 701 aaKnown RBP11.82□□□□□ -0.52
LRRC28-216ENST00000559819 ZSCAN16Q9H4T2 348 aaPredicted RBP11.82□□□□□ -0.52
LRRC28-216ENST00000559819 PYCARDQ9ULZ3 195 aa11.82□□□□□ -0.52
LRRC28-216ENST00000559819 PCCAP05165 728 aaPredicted RBP11.81□□□□□ -0.52
LRRC28-216ENST00000559819 TERF1P54274 439 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 OTUD7BQ6GQQ9 843 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 USP28Q96RU2 1077 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 DNAJC25Q9H1X3 360 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 GOLPH3LQ9H4A5 285 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 ZNF335Q9H4Z2 1342 aaPredicted RBP11.81□□□□□ -0.52
LRRC28-216ENST00000559819 A0A087WWV3 80 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 IFIT5Q13325 482 aaKnown RBP11.81□□□□□ -0.52
LRRC28-216ENST00000559819 ILDR1Q86SU0 546 aaPredicted RBP11.81□□□□□ -0.52
LRRC28-216ENST00000559819 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.81□□□□□ -0.52
LRRC28-216ENST00000559819 RIC1Q4ADV7 1423 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 SALL1Q9NSC2 1324 aa11.81□□□□□ -0.52
LRRC28-216ENST00000559819 RRP9O43818 475 aaKnown RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 NAA16Q6N069 864 aaPredicted RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 SASS6Q6UVJ0 657 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 RBM43Q6ZSC3 357 aaKnown RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 GREM2Q9H772 168 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 FGAP02671 866 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 CSF1RP07333 972 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 FDPSP14324 419 aaKnown RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 HMGN5P82970 282 aaKnown RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 METTL24Q5JXM2 366 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 CCAR1Q8IX12 1150 aaKnown RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 ZBTB38Q8NAP3 1195 aaPredicted RBP11.8□□□□□ -0.52
LRRC28-216ENST00000559819 CFAP45Q9UL16 551 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 AKAP2Q9Y2D5 859 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 ATP2B3Q16720 1220 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 NKX2-3Q8TAU0 364 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 SLC4A9Q96Q91 983 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 DENND2AQ9ULE3 1009 aa11.8□□□□□ -0.52
LRRC28-216ENST00000559819 ABCA3Q99758 1704 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 NWD2Q9ULI1 1742 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 CARMIL3Q8ND23 1372 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 MAP3K15Q6ZN16 1313 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 PTGS1P23219 599 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 ITGA6P23229 1130 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 MCAMP43121 646 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 TRIM28Q13263 835 aaKnown RBP11.79□□□□□ -0.52
LRRC28-216ENST00000559819 KLHL34Q8N239 644 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 ZNF274Q96GC6 653 aaPredicted RBP11.79□□□□□ -0.52
LRRC28-216ENST00000559819 FAM13BQ9NYF5 915 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 PRC1O43663 620 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 ANTXR2P58335 489 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 PLA2G12BQ9BX93 195 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 GJB4Q9NTQ9 266 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 RCOR1Q9UKL0 485 aa11.79□□□□□ -0.52
LRRC28-216ENST00000559819 GPAA1O43292 621 aa11.78□□□□□ -0.52
LRRC28-216ENST00000559819 IMMTQ16891 758 aaKnown RBP11.78□□□□□ -0.52
LRRC28-216ENST00000559819 GIGYF2Q6Y7W6 1299 aaKnown RBP11.78□□□□□ -0.52
LRRC28-216ENST00000559819 LDHAL6AQ6ZMR3 332 aa11.78□□□□□ -0.52
LRRC28-216ENST00000559819 C11orf57Q6ZUT1 292 aaPredicted RBP11.78□□□□□ -0.52
LRRC28-216ENST00000559819 TTLL11Q8NHH1 800 aa11.78□□□□□ -0.52
LRRC28-216ENST00000559819 APPBP2Q92624 585 aa11.78□□□□□ -0.52
LRRC28-216ENST00000559819 ERCC4Q92889 916 aaPredicted RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms