RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 CREBZFQ9NS37 354 aa10.28□□□□□ -0.76
SNX1-207ENST00000559401 MKRN1Q9UHC7 482 aaKnown RBP10.28□□□□□ -0.76
SNX1-207ENST00000559401 TRAF5O00463 557 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 IPO8O15397 1037 aaKnown RBP10.27□□□□□ -0.77
SNX1-207ENST00000559401 VIL1P09327 827 aaKnown RBP10.27□□□□□ -0.77
SNX1-207ENST00000559401 KIF4BQ2VIQ3 1234 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 ZNF804AQ7Z570 1209 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 DNAJC5GQ8N7S2 189 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 ANKRD44Q8N8A2 993 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 PUS3Q9BZE2 481 aaKnown RBP10.27□□□□□ -0.77
SNX1-207ENST00000559401 ZNF408Q9H9D4 720 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 ABT1Q9ULW3 272 aaKnown RBP10.27□□□□□ -0.77
SNX1-207ENST00000559401 ZNF646O15015 1829 aaPredicted RBP10.27□□□□□ -0.77
SNX1-207ENST00000559401 ZBED9Q6R2W3 1325 aa10.27□□□□□ -0.77
SNX1-207ENST00000559401 BCAR3O75815 825 aa10.26□□□□□ -0.77
SNX1-207ENST00000559401 EGFRP00533 1210 aa10.26□□□□□ -0.77
SNX1-207ENST00000559401 HIRAP54198 1017 aaPredicted RBP10.26□□□□□ -0.77
SNX1-207ENST00000559401 BRPF1P55201 1214 aaPredicted RBP10.26□□□□□ -0.77
SNX1-207ENST00000559401 FMR1Q06787 632 aaKnown RBP eCLIP10.26□□□□□ -0.77
SNX1-207ENST00000559401 RABL6Q3YEC7 729 aaPredicted RBP10.26□□□□□ -0.77
SNX1-207ENST00000559401 METTL24Q5JXM2 366 aa10.26□□□□□ -0.77
SNX1-207ENST00000559401 PAXIP1Q6ZW49 1069 aaPredicted RBP10.26□□□□□ -0.77
SNX1-207ENST00000559401 AGBL3Q8NEM8 1001 aa10.26□□□□□ -0.77
SNX1-207ENST00000559401 KLHDC4Q8TBB5 520 aa10.26□□□□□ -0.77
SNX1-207ENST00000559401 CLUAP1Q96AJ1 413 aa10.26□□□□□ -0.77
SNX1-207ENST00000559401 GLIS2Q9BZE0 524 aaPredicted RBP10.26□□□□□ -0.77
SNX1-207ENST00000559401 USP17L8P0C7I0 530 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 GTF2IP78347 998 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 TTLL5Q6EMB2 1281 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 OGFOD1Q8N543 542 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 ZC3H15Q8WU90 426 aaKnown RBP10.25□□□□□ -0.77
SNX1-207ENST00000559401 ARHGAP45Q92619 1136 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 DCPSQ96C86 337 aaKnown RBP10.25□□□□□ -0.77
SNX1-207ENST00000559401 MXD3Q9BW11 206 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 GGA3Q9NZ52 723 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 HDAC5Q9UQL6 1122 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 MROH5Q6ZUA9 1318 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 MYO3BQ8WXR4 1341 aa10.25□□□□□ -0.77
SNX1-207ENST00000559401 POLR2AP24928 1970 aaKnown RBP10.25□□□□□ -0.77
SNX1-207ENST00000559401 ZNF609O15014 1411 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 CELF2O95319 508 aaKnown RBP10.24□□□□□ -0.77
SNX1-207ENST00000559401 GRM1Q13255 1194 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 LRRC24Q50LG9 513 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 DACT2Q5SW24 774 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 STRIP1Q5VSL9 837 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 ZKSCAN2Q63HK3 967 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 ATF7IPQ6VMQ6 1270 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 CDC37L1Q7L3B6 337 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 KRT26Q7Z3Y9 468 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 USP48Q86UV5 1035 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 KIAA0825Q8IV33 1275 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 MEIS3Q99687 375 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 CD209Q9NNX6 404 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 MYOZ2Q9NPC6 264 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 TNNQ9UQP3 1299 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 JAG2Q9Y219 1238 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 LRRFIP2Q9Y608 721 aaKnown RBP10.24□□□□□ -0.77
SNX1-207ENST00000559401 CNTNAP1P78357 1384 aa10.24□□□□□ -0.77
SNX1-207ENST00000559401 MYH13Q9UKX3 1938 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 ADM5C9JUS6 153 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 GNAI3P08754 354 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 TRIM27P14373 513 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 GYG1P46976 350 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 ZNF280AP59817 542 aaPredicted RBP10.23□□□□□ -0.77
SNX1-207ENST00000559401 UBE4AQ14139 1066 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 DEFB115Q30KQ5 88 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 INTS3Q68E01 1043 aaKnown RBP10.23□□□□□ -0.77
SNX1-207ENST00000559401 C15orf52Q6ZUT6 534 aaKnown RBP10.23□□□□□ -0.77
SNX1-207ENST00000559401 VPS37DQ86XT2 251 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 SULF1Q8IWU6 871 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 FTSJ3Q8IY81 847 aaKnown RBP10.23□□□□□ -0.77
SNX1-207ENST00000559401 GMLQ99445 158 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 SIL1Q9H173 461 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 PGAP2Q9UHJ9 254 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 HDAC9Q9UKV0 1011 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 RIPOR2Q9Y4F9 1068 aa10.23□□□□□ -0.77
SNX1-207ENST00000559401 ARAP2Q8WZ64 1704 aa10.22□□□□□ -0.77
SNX1-207ENST00000559401 F8W031 263 aaPredicted RBP10.22□□□□□ -0.77
SNX1-207ENST00000559401 EYA2O00167 538 aa10.22□□□□□ -0.77
SNX1-207ENST00000559401 FRAT2O75474 233 aaPredicted RBP10.22□□□□□ -0.77
SNX1-207ENST00000559401 SASH1O94885 1247 aa10.22□□□□□ -0.77
SNX1-207ENST00000559401 SCARF1Q14162 830 aa10.22□□□□□ -0.77
SNX1-207ENST00000559401 ANGEL2Q5VTE6 544 aaKnown RBP10.22□□□□□ -0.77
SNX1-207ENST00000559401 JMYQ8N9B5 988 aa10.22□□□□□ -0.77
SNX1-207ENST00000559401 ASTN2O75129 1339 aaPredicted RBP10.22□□□□□ -0.77
SNX1-207ENST00000559401 IRS2Q9Y4H2 1338 aa10.22□□□□□ -0.77
SNX1-207ENST00000559401 PDE8BO95263 885 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 IFIT1P09914 478 aaKnown RBP10.21□□□□□ -0.77
SNX1-207ENST00000559401 IL1R1P14778 569 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 HIBADHP31937 336 aaKnown RBP10.21□□□□□ -0.77
SNX1-207ENST00000559401 VEGFBP49765 207 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 CHAF1AQ13111 956 aaPredicted RBP10.21□□□□□ -0.77
SNX1-207ENST00000559401 CAVIN4Q5BKX8 364 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 CST9Q5W186 159 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 DLK2Q6UY11 383 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 TMEM57Q8N5G2 664 aa10.21□□□□□ -0.77
SNX1-207ENST00000559401 IQSEC3Q9UPP2 1182 aaPredicted RBP10.21□□□□□ -0.77
SNX1-207ENST00000559401 CEP350Q5VT06 3117 aa10.2□□□□□ -0.78
SNX1-207ENST00000559401 RASSF10A6NK89 507 aa10.2□□□□□ -0.78
SNX1-207ENST00000559401 SRGAP3O43295 1099 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms