RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CABP4P57796 275 aa9.56□□□□□ -0.88
VPS13C-208ENST00000559119 XKR5Q6UX68 686 aa9.56□□□□□ -0.88
VPS13C-208ENST00000559119 ADAMTSL4Q6UY14 1074 aa9.56□□□□□ -0.88
VPS13C-208ENST00000559119 POP1Q99575 1024 aaKnown RBP9.56□□□□□ -0.88
VPS13C-208ENST00000559119 RAXQ9Y2V3 346 aa9.56□□□□□ -0.88
VPS13C-208ENST00000559119 PDGFAP04085 211 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 MZF1P28698 734 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-208ENST00000559119 DUOXA2Q1HG44 320 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 C1orf127Q8N9H9 656 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 GTF3C2Q8WUA4 911 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-208ENST00000559119 UBL7Q96S82 380 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-208ENST00000559119 KRTAP4-8Q9BYQ9 185 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 ADAM19Q9H013 955 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 SEC31BQ9NQW1 1179 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 KCNK4Q9NYG8 393 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 SALL4Q9UJQ4 1053 aa9.55□□□□□ -0.88
VPS13C-208ENST00000559119 DHX15O43143 795 aaKnown RBP9.54□□□□□ -0.88
VPS13C-208ENST00000559119 MPSTP25325 297 aa9.54□□□□□ -0.88
VPS13C-208ENST00000559119 EIF1AXP47813 144 aaKnown RBP9.54□□□□□ -0.88
VPS13C-208ENST00000559119 ALKBH2Q6NS38 261 aa9.54□□□□□ -0.88
VPS13C-208ENST00000559119 PMEPA1Q969W9 287 aa9.54□□□□□ -0.88
VPS13C-208ENST00000559119 STOML1Q9UBI4 398 aa9.54□□□□□ -0.88
VPS13C-208ENST00000559119 A6NHS1 94 aa9.53□□□□□ -0.88
VPS13C-208ENST00000559119 H3BRJ5 948 aa9.53□□□□□ -0.88
VPS13C-208ENST00000559119 GSC2O15499 205 aa9.53□□□□□ -0.88
VPS13C-208ENST00000559119 AAMPQ13685 434 aa9.53□□□□□ -0.88
VPS13C-208ENST00000559119 GGNBP2Q9H3C7 697 aa9.53□□□□□ -0.88
VPS13C-208ENST00000559119 PPP1R15AO75807 674 aaPredicted RBP9.52□□□□□ -0.89
VPS13C-208ENST00000559119 PIP4K2BP78356 416 aa9.52□□□□□ -0.89
VPS13C-208ENST00000559119 CCDC82Q8N4S0 544 aa9.52□□□□□ -0.89
VPS13C-208ENST00000559119 KLHDC7BQ96G42 594 aa9.52□□□□□ -0.89
VPS13C-208ENST00000559119 PDE2AO00408 941 aaPredicted RBP9.51□□□□□ -0.89
VPS13C-208ENST00000559119 TM4SF5O14894 197 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 DDX3YO15523 660 aaKnown RBP9.51□□□□□ -0.89
VPS13C-208ENST00000559119 ACPPP15309 386 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 SSFA2P28290 1259 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 UVSSAQ2YD98 709 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 KIAA1211Q6ZU35 1233 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 WNT8BQ93098 351 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 UTP4Q969X6 686 aaKnown RBP9.51□□□□□ -0.89
VPS13C-208ENST00000559119 PCMTD2Q9NV79 361 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 DZANK1Q9NVP4 752 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 GTF3C3Q9Y5Q9 886 aa9.51□□□□□ -0.89
VPS13C-208ENST00000559119 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.51□□□□□ -0.89
VPS13C-208ENST00000559119 TMEM88BA6NKF7 163 aa9.5□□□□□ -0.89
VPS13C-208ENST00000559119 IGLV1-40P01703 118 aa9.5□□□□□ -0.89
VPS13C-208ENST00000559119 UBASH3BQ8TF42 649 aa9.5□□□□□ -0.89
VPS13C-208ENST00000559119 FOXD4L4Q8WXT5 416 aaPredicted RBP9.5□□□□□ -0.89
VPS13C-208ENST00000559119 OSGEPQ9NPF4 335 aa9.5□□□□□ -0.89
VPS13C-208ENST00000559119 POLIQ9UNA4 740 aa9.5□□□□□ -0.89
VPS13C-208ENST00000559119 MTMR7Q9Y216 660 aa9.5□□□□□ -0.89
VPS13C-208ENST00000559119 NFKBIEO00221 500 aa9.49□□□□□ -0.89
VPS13C-208ENST00000559119 ADAM11O75078 769 aa9.49□□□□□ -0.89
VPS13C-208ENST00000559119 ARL4DP49703 201 aa9.49□□□□□ -0.89
VPS13C-208ENST00000559119 MTMR3Q13615 1198 aa9.49□□□□□ -0.89
VPS13C-208ENST00000559119 ARMC10Q8N2F6 343 aa9.49□□□□□ -0.89
VPS13C-208ENST00000559119 SLC7A3Q8WY07 619 aa9.49□□□□□ -0.89
VPS13C-208ENST00000559119 SART1O43290 800 aaKnown RBP9.48□□□□□ -0.89
VPS13C-208ENST00000559119 TRPA1O75762 1119 aa9.48□□□□□ -0.89
VPS13C-208ENST00000559119 SSTR4P31391 388 aa9.48□□□□□ -0.89
VPS13C-208ENST00000559119 FAM46AQ96IP4 442 aaKnown RBP9.48□□□□□ -0.89
VPS13C-208ENST00000559119 CHRDQ9H2X0 955 aa9.48□□□□□ -0.89
VPS13C-208ENST00000559119 PHACTR2O75167 634 aa9.47□□□□□ -0.89
VPS13C-208ENST00000559119 FAM13AO94988 1023 aa9.47□□□□□ -0.89
VPS13C-208ENST00000559119 NLRP12P59046 1061 aa9.47□□□□□ -0.89
VPS13C-208ENST00000559119 TMEM102Q8N9M5 508 aaPredicted RBP9.47□□□□□ -0.89
VPS13C-208ENST00000559119 HHIPQ96QV1 700 aa9.47□□□□□ -0.89
VPS13C-208ENST00000559119 OSMRQ99650 979 aa9.47□□□□□ -0.89
VPS13C-208ENST00000559119 EDN3P14138 238 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 USP5P45974 858 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 EHHADHQ08426 723 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 ANKRD34AQ69YU3 496 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 MYRFLQ96LU7 910 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 RNF208Q9H0X6 261 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 SOX13Q9UN79 622 aa9.46□□□□□ -0.9
VPS13C-208ENST00000559119 TNFRSF21O75509 655 aa9.45□□□□□ -0.9
VPS13C-208ENST00000559119 SNX29Q8TEQ0 813 aa9.45□□□□□ -0.9
VPS13C-208ENST00000559119 RUSC1Q9BVN2 902 aa9.45□□□□□ -0.9
VPS13C-208ENST00000559119 C7orf69Q9H7B7 122 aa9.45□□□□□ -0.9
VPS13C-208ENST00000559119 EREGO14944 169 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 NPR3P17342 541 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 C19orf57Q0VDD7 668 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 NFIAQ12857 509 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 SF3B2Q13435 895 aaKnown RBP9.44□□□□□ -0.9
VPS13C-208ENST00000559119 FDX2Q6P4F2 183 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 TRIM42Q8IWZ5 723 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 BSNDQ8WZ55 320 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 NXPE3Q969Y0 559 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 KCNF1Q9H3M0 494 aa9.44□□□□□ -0.9
VPS13C-208ENST00000559119 HMX2A2RU54 273 aa9.43□□□□□ -0.9
VPS13C-208ENST00000559119 COBLO75128 1261 aa9.43□□□□□ -0.9
VPS13C-208ENST00000559119 CD97P48960 835 aa9.43□□□□□ -0.9
VPS13C-208ENST00000559119 FKBP4Q02790 459 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS13C-208ENST00000559119 IKBKEQ14164 716 aa9.43□□□□□ -0.9
VPS13C-208ENST00000559119 FAM20CQ8IXL6 584 aa9.43□□□□□ -0.9
VPS13C-208ENST00000559119 ZKSCAN3Q9BRR0 538 aa9.43□□□□□ -0.9
VPS13C-208ENST00000559119 ABL1P00519 1130 aa9.42□□□□□ -0.9
VPS13C-208ENST00000559119 TGFB1P01137 390 aa9.42□□□□□ -0.9
VPS13C-208ENST00000559119 BMP3P12645 472 aa9.42□□□□□ -0.9
VPS13C-208ENST00000559119 RNF43Q68DV7 783 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms