RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 ITGB4P16144 1822 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 RNF113AO15541 343 aaKnown RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 CIAO1O76071 339 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 SYT1P21579 422 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 IGHMBP2P38935 993 aaKnown RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 SLC4A8Q2Y0W8 1093 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 BARGINQ6ZT62 677 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 Q6ZUG5 572 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 NBPF5PQ86XG9 351 aaPredicted RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 VPS37DQ86XT2 251 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 NEK1Q96PY6 1258 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 ZSWIM6Q9HCJ5 1215 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 TOMM22Q9NS69 142 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 ERVV-1B6SEH8 477 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 PSMA5P28066 241 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 GYG1P46976 350 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 VPS72Q15906 364 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 CCDC152Q4G0S7 254 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 STOX1Q6ZVD7 989 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 MIGA1Q8NAN2 632 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 SMARCC1Q92922 1105 aaPredicted RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 CHMP4CQ96CF2 233 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 NCOA5Q9HCD5 579 aaKnown RBP7.06□□□□□ -1.28
SYNE2-225ENST00000557060 INCENPQ9NQS7 918 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 ZNF652Q9Y2D9 606 aa7.06□□□□□ -1.28
SYNE2-225ENST00000557060 AHDC1Q5TGY3 1603 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 BCL9LQ86UU0 1499 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 JCADQ9P266 1359 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 MED23Q9ULK4 1368 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 JAK2O60674 1132 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 CYP2E1P05181 493 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 APOBRQ0VD83 1088 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 SEPT12Q8IYM1 358 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 PIH1D3Q9NQM4 214 aaKnown RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 DENND2AQ9ULE3 1009 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 CNPY2Q9Y2B0 182 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 DOT1LQ8TEK3 1739 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 TRIM37O94972 964 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 RPS6KB1P23443 525 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 GUCY1B3Q02153 619 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 CEBPZQ03701 1054 aaKnown RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 GAS2L3Q86XJ1 694 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 GJD4Q96KN9 370 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 SETDB2Q96T68 719 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 WWC3Q9ULE0 1092 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 LAMB4A4D0S4 1761 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 PLEKHG2Q9H7P9 1386 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 UBR2Q8IWV8 1755 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 GPAA1O43292 621 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 STX6O43752 255 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 RXRAP19793 462 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 CHRNDQ07001 517 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 CUL4AQ13619 759 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 RASGRF1Q13972 1273 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 PUM3Q15397 648 aaKnown RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 LARP1BQ659C4 914 aaKnown RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 FAM196AQ6ZSG2 479 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 MAGEB6Q8N7X4 407 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 CELF1Q92879 486 aaKnown RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 LRP2BPQ9P2M1 347 aa7.05□□□□□ -1.28
SYNE2-225ENST00000557060 RTCBQ9Y3I0 505 aaKnown RBP7.05□□□□□ -1.28
SYNE2-225ENST00000557060 GADD45BO75293 160 aaPredicted RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 NTSR2O95665 410 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 RFC4P35249 363 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 ST3GAL1Q11201 340 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 TOB2Q14106 344 aaPredicted RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 RRP12Q5JTH9 1297 aaKnown RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 CCDC144CPQ8IYA2 1237 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 RNF214Q8ND24 703 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 QTRT2Q9H974 415 aaKnown RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 TFCP2L1Q9NZI6 479 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 PLCH1Q4KWH8 1693 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 CDHR2Q9BYE9 1310 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 ZNF532Q9HCE3 1301 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 FGAP02671 866 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 SLC5A1P13866 664 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 DNM1Q05193 864 aaKnown RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 CHAF1AQ13111 956 aaPredicted RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 ZMYM1Q5SVZ6 1142 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 CERKQ8TCT0 537 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 GPT2Q8TD30 523 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 ARHGEF1Q92888 912 aaKnown RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 AIDAQ96BJ3 306 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 AK7Q96M32 723 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 LMBRD1Q9NUN5 540 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 HMG20BQ9P0W2 317 aa7.04□□□□□ -1.28
SYNE2-225ENST00000557060 TFIP11Q9UBB9 837 aaKnown RBP7.04□□□□□ -1.28
SYNE2-225ENST00000557060 WDR33Q9C0J8 1336 aaKnown RBP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 SLIT2O94813 1529 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 SYCE3A1L190 88 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 E7EWF7 191 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 BRD1O95696 1058 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 XRCC6P12956 609 aaKnown RBP eCLIP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 KLRK1P26718 216 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 ANKRD18AQ8IVF6 992 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 SPATA5Q8NB90 893 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 LPIN2Q92539 896 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 GPR101Q96P66 508 aaPredicted RBP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 PLA2G12BQ9BX93 195 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms