RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 FRMD6Q96NE9 622 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 DZANK1Q9NVP4 752 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 NAGPAQ9UK23 515 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 CELA2BP08218 269 aaPredicted RBP9.43□□□□□ -0.9
LINC00643-204ENST00000555934 BCRP11274 1271 aa9.43□□□□□ -0.9
LINC00643-204ENST00000555934 HOXD8P13378 290 aaPredicted RBP9.43□□□□□ -0.9
LINC00643-204ENST00000555934 LDLRAD1Q5T700 205 aa9.43□□□□□ -0.9
LINC00643-204ENST00000555934 ZNF385CQ66K41 422 aaPredicted RBP9.43□□□□□ -0.9
LINC00643-204ENST00000555934 GLIS3Q8NEA6 775 aa9.43□□□□□ -0.9
LINC00643-204ENST00000555934 ASAP3Q8TDY4 903 aa9.43□□□□□ -0.9
LINC00643-204ENST00000555934 TNFRSF25Q93038 417 aa9.43□□□□□ -0.9
LINC00643-204ENST00000555934 OIP5O43482 229 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 EPXP11678 715 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 PERM1Q5SV97 790 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 C9orf131Q5VYM1 1079 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 CEP135Q66GS9 1140 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 C1orf229Q6ZS94 237 aaPredicted RBP9.42□□□□□ -0.9
LINC00643-204ENST00000555934 MICALL1Q8N3F8 863 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 TCF12Q99081 682 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 MDFIQ99750 246 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 RBSNQ9H1K0 784 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 LRRC4BQ9NT99 713 aa9.42□□□□□ -0.9
LINC00643-204ENST00000555934 ADARB2-AS1A8MUL3 147 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 GIPC1O14908 333 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 TCF3P15923 654 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 ITGAEP38570 1179 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 PCSK7Q16549 785 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 SPRED3Q2MJR0 410 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 MEI1Q5TIA1 1274 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 ELMSAN1Q6PJG2 1045 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 SVOPQ8N4V2 548 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 NUDT8Q8WV74 236 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 PLD4Q96BZ4 506 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 PBX4Q9BYU1 374 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 SMG9Q9H0W8 520 aaKnown RBP9.41□□□□□ -0.9
LINC00643-204ENST00000555934 PPP4R2Q9NY27 417 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 FAM8A1Q9UBU6 413 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 TRAK1Q9UPV9 953 aa9.41□□□□□ -0.9
LINC00643-204ENST00000555934 NFKBIEO00221 500 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 PDE2AO00408 941 aaPredicted RBP9.4□□□□□ -0.9
LINC00643-204ENST00000555934 GRIA4P48058 902 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 MAP3K10Q02779 954 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 PSAPL1Q6NUJ1 521 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 GALNT6Q8NCL4 622 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 EDARADDQ8WWZ3 215 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 CRELD1Q96HD1 420 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 ABCB6Q9NP58 842 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 AKAP2Q9Y2D5 859 aa9.4□□□□□ -0.9
LINC00643-204ENST00000555934 ELOA3CA0A087WX78 387 aaPredicted RBP9.39□□□□□ -0.91
LINC00643-204ENST00000555934 TMEM238LA0A1B0GVL6 79 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 ELOA3DA6NLF2 546 aaPredicted RBP9.39□□□□□ -0.91
LINC00643-204ENST00000555934 ELOA3BQ3SY89 546 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 DTHD1Q6ZMT9 781 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 CCNJLQ8IV13 435 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 ELOA3Q8NG57 546 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 NXPE3Q969Y0 559 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 POP1Q99575 1024 aaKnown RBP9.39□□□□□ -0.91
LINC00643-204ENST00000555934 LACRTQ9GZZ8 138 aa9.39□□□□□ -0.91
LINC00643-204ENST00000555934 SHISA8B8ZZ34 492 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 FBXO24O75426 580 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 SMNDC1O75940 238 aaKnown RBP eCLIP9.38□□□□□ -0.91
LINC00643-204ENST00000555934 ALAS2P22557 587 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 GSTT1P30711 240 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 GDF6Q6KF10 455 aaPredicted RBP9.38□□□□□ -0.91
LINC00643-204ENST00000555934 ADAMTSL4Q6UY14 1074 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 TMEM102Q8N9M5 508 aaPredicted RBP9.38□□□□□ -0.91
LINC00643-204ENST00000555934 LPIN3Q9BQK8 851 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 IGSF5Q9NSI5 407 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 TTF2Q9UNY4 1162 aaKnown RBP9.38□□□□□ -0.91
LINC00643-204ENST00000555934 TRIM33Q9UPN9 1127 aa9.38□□□□□ -0.91
LINC00643-204ENST00000555934 SCAMP3O14828 347 aaKnown RBP9.37□□□□□ -0.91
LINC00643-204ENST00000555934 HDLBPQ00341 1268 aaKnown RBP9.37□□□□□ -0.91
LINC00643-204ENST00000555934 PRPF40BQ6NWY9 871 aaKnown RBP9.37□□□□□ -0.91
LINC00643-204ENST00000555934 SRCIN1Q9C0H9 1055 aa9.37□□□□□ -0.91
LINC00643-204ENST00000555934 A0A096LPE4 126 aa9.36□□□□□ -0.91
LINC00643-204ENST00000555934 A0A1W2PPZ6 126 aa9.36□□□□□ -0.91
LINC00643-204ENST00000555934 ARHGEF15O94989 841 aa9.36□□□□□ -0.91
LINC00643-204ENST00000555934 C3orf58Q8NDZ4 430 aa9.36□□□□□ -0.91
LINC00643-204ENST00000555934 STARD13Q9Y3M8 1113 aa9.36□□□□□ -0.91
LINC00643-204ENST00000555934 RGS9O75916 674 aaPredicted RBP9.35□□□□□ -0.91
LINC00643-204ENST00000555934 CDC25BP30305 580 aa9.35□□□□□ -0.91
LINC00643-204ENST00000555934 ZNF76P36508 570 aa9.35□□□□□ -0.91
LINC00643-204ENST00000555934 TAF1CQ15572 869 aaPredicted RBP9.35□□□□□ -0.91
LINC00643-204ENST00000555934 C8orf86Q6ZUL3 223 aa9.35□□□□□ -0.91
LINC00643-204ENST00000555934 BHLHE41Q9C0J9 482 aaPredicted RBP9.35□□□□□ -0.91
LINC00643-204ENST00000555934 MUC3BQ9H195 1237 aa9.35□□□□□ -0.91
LINC00643-204ENST00000555934 JPH1Q9HDC5 661 aaPredicted RBP9.35□□□□□ -0.91
LINC00643-204ENST00000555934 SH2B1Q9NRF2 756 aaPredicted RBP9.35□□□□□ -0.91
LINC00643-204ENST00000555934 ENAMQ9NRM1 1142 aa9.35□□□□□ -0.91
LINC00643-204ENST00000555934 ALBP02768 609 aa9.34□□□□□ -0.91
LINC00643-204ENST00000555934 FANCCQ00597 558 aa9.34□□□□□ -0.91
LINC00643-204ENST00000555934 TPTE2Q6XPS3 522 aa9.34□□□□□ -0.91
LINC00643-204ENST00000555934 CHSY3Q70JA7 882 aa9.34□□□□□ -0.91
LINC00643-204ENST00000555934 BTBD6Q96KE9 485 aa9.34□□□□□ -0.91
LINC00643-204ENST00000555934 AMPD1P23109 780 aa9.33□□□□□ -0.92
LINC00643-204ENST00000555934 ZNF157P51786 506 aaPredicted RBP9.33□□□□□ -0.92
LINC00643-204ENST00000555934 NEDD1Q8NHV4 660 aa9.33□□□□□ -0.92
LINC00643-204ENST00000555934 RNF34Q969K3 372 aa9.33□□□□□ -0.92
LINC00643-204ENST00000555934 USP31Q70CQ4 1352 aa9.33□□□□□ -0.92
LINC00643-204ENST00000555934 F6X3S4 739 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms