RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 KIF3AQ9Y496 699 aa8.28□□□□□ -1.08
TDP1-213ENST00000555880 HOXB1P14653 301 aaPredicted RBP8.27□□□□□ -1.09
TDP1-213ENST00000555880 PTPN12Q05209 780 aaKnown RBP8.27□□□□□ -1.09
TDP1-213ENST00000555880 MCMDC2Q4G0Z9 681 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 MTERF4Q7Z6M4 381 aaKnown RBP8.27□□□□□ -1.09
TDP1-213ENST00000555880 TTC6Q86TZ1 520 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 TICAM2Q86XR7 235 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 PLBD2Q8NHP8 589 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 FAM200AQ8TCP9 573 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 DDX17Q92841 729 aaKnown RBP8.27□□□□□ -1.09
TDP1-213ENST00000555880 GTF3C6Q969F1 213 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 TCEANC2Q96MN5 208 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 HAUS7Q99871 368 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 FUCA2Q9BTY2 467 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 TNMDQ9H2S6 317 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 SLAIN2Q9P270 581 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 CHMP3Q9Y3E7 222 aa8.27□□□□□ -1.09
TDP1-213ENST00000555880 PARP4Q9UKK3 1724 aaKnown RBP8.27□□□□□ -1.09
TDP1-213ENST00000555880 RFX5P48382 616 aaPredicted RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 HMGN5P82970 282 aaKnown RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 CHMP4CQ96CF2 233 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 USP16Q9Y5T5 823 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 COL18A1P39060 1754 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 SH3TC1Q8TE82 1336 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 ZNF335Q9H4Z2 1342 aaPredicted RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 ZNF609O15014 1411 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 TNS3Q68CZ2 1445 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 ATP5J2-PTCD1G3V325 749 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 PTCD1O75127 700 aaKnown RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 TYRO3Q06418 890 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 NOLC1Q14978 699 aaKnown RBP eCLIP8.26□□□□□ -1.09
TDP1-213ENST00000555880 Q6ZUG5 572 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 BRINP3Q76B58 766 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 KBTBD3Q8NAB2 608 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 BICD2Q8TD16 824 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 JARID2Q92833 1246 aaPredicted RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 EDC3Q96F86 508 aaKnown RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 PRIMPOLQ96LW4 560 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 DBNDD2Q9BQY9 259 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 LLPHQ9BRT6 129 aaKnown RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 ZSCAN16Q9H4T2 348 aaPredicted RBP8.26□□□□□ -1.09
TDP1-213ENST00000555880 CFAP45Q9UL16 551 aa8.26□□□□□ -1.09
TDP1-213ENST00000555880 SPATA31A3Q5VYP0 1347 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 CYP27B1O15528 508 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 DTNBO60941 627 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 CAVIN2O95810 425 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 PIP4K2AP48426 406 aaPredicted RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 CHAF1AQ13111 956 aaPredicted RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 CAMK4Q16566 473 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 LRRFIP1Q32MZ4 808 aaKnown RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 LMBR1LQ6UX01 489 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 DDX46Q7L014 1031 aaKnown RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 LRP10Q7Z4F1 713 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 LEO1Q8WVC0 666 aaPredicted RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 NEUROD6Q96NK8 337 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 KRTAP3-3Q9BYR6 98 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 KRTAP3-2Q9BYR7 98 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 TTC12Q9H892 705 aaPredicted RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 HELLSQ9NRZ9 838 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 PAG1Q9NWQ8 432 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 CWC25Q9NXE8 425 aaPredicted RBP8.25□□□□□ -1.09
TDP1-213ENST00000555880 DACT1Q9NYF0 836 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 FAM13BQ9NYF5 915 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 TAF6LQ9Y6J9 622 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 PALLDQ8WX93 1383 aa8.25□□□□□ -1.09
TDP1-213ENST00000555880 LAMA4Q16363 1823 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 SPEF2Q9C093 1822 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 MYH15Q9Y2K3 1946 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 RIMBP2O15034 1052 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 LIG1P18858 919 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 FAM173BQ6P4H8 233 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 MPNDQ8N594 471 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 CABLES1Q8TDN4 633 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 BRF1Q92994 677 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 ZNF830Q96NB3 372 aaPredicted RBP8.24□□□□□ -1.09
TDP1-213ENST00000555880 CLSTN2Q9H4D0 955 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 GPR108Q9NPR9 543 aa8.24□□□□□ -1.09
TDP1-213ENST00000555880 TFIP11Q9UBB9 837 aaKnown RBP8.24□□□□□ -1.09
TDP1-213ENST00000555880 GOLIM4O00461 696 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 JAK2O60674 1132 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 CYP21A2P08686 494 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 IL15P40933 162 aaPredicted RBP8.23□□□□□ -1.09
TDP1-213ENST00000555880 RBM10P98175 930 aaKnown RBP8.23□□□□□ -1.09
TDP1-213ENST00000555880 NAA16Q6N069 864 aaPredicted RBP8.23□□□□□ -1.09
TDP1-213ENST00000555880 CCDC129Q6ZRS4 1044 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 DHX32Q7L7V1 743 aaKnown RBP8.23□□□□□ -1.09
TDP1-213ENST00000555880 SPNS2Q8IVW8 549 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 CKAP2LQ8IYA6 745 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 DSCC1Q9BVC3 393 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 SPTLC3Q9NUV7 552 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 MRVI1Q9Y6F6 885 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 NUP188Q5SRE5 1749 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 PCDH11XQ9BZA7 1347 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 PCDH11YQ9BZA8 1340 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 H7C1W4 665 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 PFKFB2O60825 505 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 CASP7P55210 303 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 RESTQ13127 1097 aa8.23□□□□□ -1.09
TDP1-213ENST00000555880 COL9A3Q14050 684 aaPredicted RBP8.23□□□□□ -1.09
TDP1-213ENST00000555880 CHRNA2Q15822 529 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms