RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 GRM8O00222 908 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 CELF2O95319 508 aaKnown RBP11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 IGHMBP2P38935 993 aaKnown RBP11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 ZNF280AP59817 542 aaPredicted RBP11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 CHRNDQ07001 517 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 SLFN5Q08AF3 891 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 KIF4BQ2VIQ3 1234 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 DEFB115Q30KQ5 88 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 DACT2Q5SW24 774 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 CYP4F22Q6NT55 531 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 MXD3Q9BW11 206 aa11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 POLR2AP24928 1970 aaKnown RBP11.84□□□□□ -0.51
VIPAS39-207ENST00000555854 E9PSI1 815 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 SAPCD2Q86UD0 394 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 SSH1Q8WYL5 1049 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 SUCLG2Q96I99 432 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 WBP1LQ9NX94 342 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 GGA3Q9NZ52 723 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 ZNF804BA4D1E1 1349 aa11.83□□□□□ -0.52
VIPAS39-207ENST00000555854 ALDH1L1O75891 902 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 NBPF7P0C2Y1 421 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 RBM26Q5T8P6 1007 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 LMBR1LQ6UX01 489 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 CDC37L1Q7L3B6 337 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 PODNQ7Z5L7 613 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 USP48Q86UV5 1035 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 TRMT2AQ8IZ69 625 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 AGBL3Q8NEM8 1001 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 ZNF594Q96JF6 807 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 CAPNS2Q96L46 248 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 ZNF408Q9H9D4 720 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 LEMD3Q9Y2U8 911 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 UTYO14607 1347 aa11.82□□□□□ -0.52
VIPAS39-207ENST00000555854 ANKRD18BA2A2Z9 1011 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 USP17L3A6NCW0 530 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 USP17L4A6NCW7 530 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 AOC2O75106 756 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 TAF5LO75529 589 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 SLC4A10Q6U841 1118 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 CHRDL2Q6WN34 429 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 USP17L1Q7RTZ2 530 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 ANKRD44Q8N8A2 993 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 HELBQ8NG08 1087 aaPredicted RBP11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 SRCIN1Q9C0H9 1055 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 COA1Q9GZY4 146 aa11.81□□□□□ -0.52
VIPAS39-207ENST00000555854 CCER2I3L3R5 266 aa11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 HSPA8P11142 646 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 IFIT5Q13325 482 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 RABL6Q3YEC7 729 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 C15orf52Q6ZUT6 534 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 KRT26Q7Z3Y9 468 aa11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 MPHOSPH8Q99549 860 aa11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 ANKRD2Q9GZV1 360 aa11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 MYOZ2Q9NPC6 264 aa11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 SCAF8Q9UPN6 1271 aaKnown RBP11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 CHMP3Q9Y3E7 222 aa11.8□□□□□ -0.52
VIPAS39-207ENST00000555854 G3V3G9 751 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 USP17L8P0C7I0 530 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 GRM1Q13255 1194 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 DCAF8Q5TAQ9 597 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 STRIP1Q5VSL9 837 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 ANGEL2Q5VTE6 544 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 CERS5Q8N5B7 392 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 HHIPL1Q96JK4 782 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 ZIC5Q96T25 663 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 PUS3Q9BZE2 481 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 BICC1Q9H694 974 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 ARAP2Q8WZ64 1704 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 PTPRCP08575 1304 aa11.79□□□□□ -0.52
VIPAS39-207ENST00000555854 PAPPA2Q9BXP8 1791 aa11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 SCARF1Q14162 830 aa11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 NBPF9Q3BBW0 867 aa11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 PAXIP1Q6ZW49 1069 aaPredicted RBP11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 CDCA5Q96FF9 252 aa11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 ZBED3Q96IU2 234 aaPredicted RBP11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 CD209Q9NNX6 404 aa11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 C9orf78Q9NZ63 289 aaPredicted RBP11.78□□□□□ -0.52
VIPAS39-207ENST00000555854 FAM155AB1AL88 458 aaPredicted RBP11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 SASH1O94885 1247 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 ECE1P42892 770 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 HUNKP57058 714 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 GTF2IP78347 998 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 ALDH1L2Q3SY69 923 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 TNS4Q8IZW8 715 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 FBXW7Q969H0 707 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 DCPSQ96C86 337 aaKnown RBP11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 GBA2Q9HCG7 927 aaPredicted RBP11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 PCDHAC2Q9Y5I4 1007 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 AOX1Q06278 1338 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 PITPNM2Q9BZ72 1349 aa11.77□□□□□ -0.53
VIPAS39-207ENST00000555854 WNT10BO00744 389 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 IL1R1P14778 569 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 KCNJ4P48050 445 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 CTCFP49711 727 aaPredicted RBP11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 LBX1P52954 281 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 CCDC57Q2TAC2 916 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 LDHAL6AQ6ZMR3 332 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 KIAA0825Q8IV33 1275 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 USP44Q9H0E7 712 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 PRDM10Q9NQV6 1147 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms