RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 TRAF5O00463 557 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 NBPF7P0C2Y1 421 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-214ENST00000554604 HIRAP54198 1017 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-214ENST00000554604 RBM26Q5T8P6 1007 aaKnown RBP15.58■□□□□ 0.08
SHMT2-214ENST00000554604 RSBN1LQ6PCB5 846 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-214ENST00000554604 LDHAL6AQ6ZMR3 332 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 USP17L1Q7RTZ2 530 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 FBXW7Q969H0 707 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 CNNM1Q9NRU3 951 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 CNTNAP1P78357 1384 aa15.58■□□□□ 0.08
SHMT2-214ENST00000554604 FMR1Q06787 632 aaKnown RBP eCLIP15.57■□□□□ 0.08
SHMT2-214ENST00000554604 AGBL3Q8NEM8 1001 aa15.57■□□□□ 0.08
SHMT2-214ENST00000554604 HELBQ8NG08 1087 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-214ENST00000554604 SUCLG2Q96I99 432 aa15.57■□□□□ 0.08
SHMT2-214ENST00000554604 ZNF594Q96JF6 807 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-214ENST00000554604 GLIS2Q9BZE0 524 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-214ENST00000554604 COA1Q9GZY4 146 aa15.57■□□□□ 0.08
SHMT2-214ENST00000554604 PGAP2Q9UHJ9 254 aa15.57■□□□□ 0.08
SHMT2-214ENST00000554604 TAF5LO75529 589 aa15.56■□□□□ 0.08
SHMT2-214ENST00000554604 KIF4BQ2VIQ3 1234 aa15.56■□□□□ 0.08
SHMT2-214ENST00000554604 CDC37L1Q7L3B6 337 aa15.56■□□□□ 0.08
SHMT2-214ENST00000554604 TXNRD3Q86VQ6 643 aa15.56■□□□□ 0.08
SHMT2-214ENST00000554604 UTYO14607 1347 aa15.56■□□□□ 0.08
SHMT2-214ENST00000554604 PLIN1O60240 522 aa15.55■□□□□ 0.08
SHMT2-214ENST00000554604 EGFRP00533 1210 aa15.55■□□□□ 0.08
SHMT2-214ENST00000554604 USP17L8P0C7I0 530 aa15.55■□□□□ 0.08
SHMT2-214ENST00000554604 DEFB115Q30KQ5 88 aa15.55■□□□□ 0.08
SHMT2-214ENST00000554604 DCPSQ96C86 337 aaKnown RBP15.55■□□□□ 0.08
SHMT2-214ENST00000554604 BICC1Q9H694 974 aaKnown RBP15.55■□□□□ 0.08
SHMT2-214ENST00000554604 ZNF609O15014 1411 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 CELF2O95319 508 aaKnown RBP15.54■□□□□ 0.08
SHMT2-214ENST00000554604 KLRK1P26718 216 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 VEGFBP49765 207 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 PAXIP1Q6ZW49 1069 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-214ENST00000554604 USP48Q86UV5 1035 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 KAZALD1Q96I82 304 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 CRBNQ96SW2 442 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 ZNF408Q9H9D4 720 aa15.54■□□□□ 0.08
SHMT2-214ENST00000554604 NOB1Q9ULX3 412 aaKnown RBP15.54■□□□□ 0.08
SHMT2-214ENST00000554604 MYO3BQ8WXR4 1341 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 ZNF646O15015 1829 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-214ENST00000554604 RASSF10A6NK89 507 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 SNAP23O00161 211 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 ZNF280AP59817 542 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-214ENST00000554604 STRIP1Q5VSL9 837 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 CST9Q5W186 159 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 TTLL5Q6EMB2 1281 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 KRT26Q7Z3Y9 468 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 ZNF804AQ7Z570 1209 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 OGFOD1Q8N543 542 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 GMLQ99445 158 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 USP44Q9H0E7 712 aa15.53■□□□□ 0.08
SHMT2-214ENST00000554604 HSPA1AP0DMV8 641 aaKnown RBP15.52■□□□□ 0.08
SHMT2-214ENST00000554604 HSPA1BP0DMV9 641 aaKnown RBP15.52■□□□□ 0.08
SHMT2-214ENST00000554604 DACT2Q5SW24 774 aa15.52■□□□□ 0.08
SHMT2-214ENST00000554604 API5Q9BZZ5 524 aaKnown RBP15.52■□□□□ 0.08
SHMT2-214ENST00000554604 MYOZ2Q9NPC6 264 aa15.52■□□□□ 0.08
SHMT2-214ENST00000554604 KIF16BQ96L93 1317 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 RARSP54136 660 aaKnown RBP15.51■□□□□ 0.07
SHMT2-214ENST00000554604 BRPF1P55201 1214 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-214ENST00000554604 GTF2IP78347 998 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 GRM1Q13255 1194 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 RABL6Q3YEC7 729 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-214ENST00000554604 C15orf52Q6ZUT6 534 aaKnown RBP15.51■□□□□ 0.07
SHMT2-214ENST00000554604 SULF1Q8IWU6 871 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 MXD3Q9BW11 206 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 CD209Q9NNX6 404 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 GGA3Q9NZ52 723 aa15.51■□□□□ 0.07
SHMT2-214ENST00000554604 ECE1P42892 770 aa15.5■□□□□ 0.07
SHMT2-214ENST00000554604 SCARF1Q14162 830 aa15.5■□□□□ 0.07
SHMT2-214ENST00000554604 ANKRD44Q8N8A2 993 aa15.5■□□□□ 0.07
SHMT2-214ENST00000554604 PUS3Q9BZE2 481 aaKnown RBP15.5■□□□□ 0.07
SHMT2-214ENST00000554604 TLL2Q9Y6L7 1015 aa15.5■□□□□ 0.07
SHMT2-214ENST00000554604 MROH5Q6ZUA9 1318 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 WDR33Q9C0J8 1336 aaKnown RBP15.49■□□□□ 0.07
SHMT2-214ENST00000554604 ADM5C9JUS6 153 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 UBTFL1P0CB47 393 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-214ENST00000554604 UBE4AQ14139 1066 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 PDE3AQ14432 1141 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 C20orf194Q5TEA3 1177 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 ANGEL2Q5VTE6 544 aaKnown RBP15.49■□□□□ 0.07
SHMT2-214ENST00000554604 KIAA0825Q8IV33 1275 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 CAPNS2Q96L46 248 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 HDAC9Q9UKV0 1011 aa15.49■□□□□ 0.07
SHMT2-214ENST00000554604 ASTN2O75129 1339 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-214ENST00000554604 IPO8O15397 1037 aaKnown RBP15.48■□□□□ 0.07
SHMT2-214ENST00000554604 BCAR3O75815 825 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 MMP14P50281 582 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 METTL24Q5JXM2 366 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 DLK2Q6UY11 383 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 SAPCD2Q86UD0 394 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 AIDAQ96BJ3 306 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 HDAC5Q9UQL6 1122 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 RIPOR2Q9Y4F9 1068 aa15.48■□□□□ 0.07
SHMT2-214ENST00000554604 IRS2Q9Y4H2 1338 aa15.47■□□□□ 0.07
SHMT2-214ENST00000554604 IL1R1P14778 569 aa15.47■□□□□ 0.07
SHMT2-214ENST00000554604 LRRC24Q50LG9 513 aa15.47■□□□□ 0.07
SHMT2-214ENST00000554604 CYP4F22Q6NT55 531 aa15.47■□□□□ 0.07
SHMT2-214ENST00000554604 KLHDC4Q8TBB5 520 aa15.47■□□□□ 0.07
SHMT2-214ENST00000554604 ARHGAP45Q92619 1136 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms