RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 NUP98P52948 1817 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 RGL2O15211 777 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 NEXNQ0ZGT2 675 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 ANKRD13DQ6ZTN6 518 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 MOB2Q70IA6 237 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 LRP10Q7Z4F1 713 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 SUPT20HQ8NEM7 779 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 CDCA5Q96FF9 252 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 TMX4Q9H1E5 349 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-208ENST00000553868 MAP3K2Q9Y2U5 619 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 CEP290O15078 2479 aa18.09■□□□□ 0.49
SHMT2-208ENST00000553868 COL6A3P12111 3177 aa18.08■□□□□ 0.49
SHMT2-208ENST00000553868 PSMD14O00487 310 aa18.08■□□□□ 0.48
SHMT2-208ENST00000553868 ALDH1L1O75891 902 aa18.08■□□□□ 0.48
SHMT2-208ENST00000553868 GNAI3P08754 354 aa18.08■□□□□ 0.48
SHMT2-208ENST00000553868 REM2Q8IYK8 340 aaPredicted RBP18.08■□□□□ 0.48
SHMT2-208ENST00000553868 PLBD2Q8NHP8 589 aa18.08■□□□□ 0.48
SHMT2-208ENST00000553868 CUL9Q8IWT3 2517 aa18.08■□□□□ 0.48
SHMT2-208ENST00000553868 EN2P19622 333 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-208ENST00000553868 MPNDQ8N594 471 aa18.07■□□□□ 0.48
SHMT2-208ENST00000553868 GGA3Q9NZ52 723 aa18.07■□□□□ 0.48
SHMT2-208ENST00000553868 HDAC5Q9UQL6 1122 aa18.07■□□□□ 0.48
SHMT2-208ENST00000553868 IBTKQ9P2D0 1353 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-208ENST00000553868 MKRN3Q13064 507 aaKnown RBP18.06■□□□□ 0.48
SHMT2-208ENST00000553868 KIF6Q6ZMV9 814 aa18.06■□□□□ 0.48
SHMT2-208ENST00000553868 CENPQQ7L2Z9 268 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-208ENST00000553868 LINS1Q8NG48 757 aa18.06■□□□□ 0.48
SHMT2-208ENST00000553868 RWDD1Q9H446 243 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-208ENST00000553868 FKTNO75072 461 aa18.05■□□□□ 0.48
SHMT2-208ENST00000553868 BEND3Q5T5X7 828 aa18.05■□□□□ 0.48
SHMT2-208ENST00000553868 TTLL7Q6ZT98 887 aa18.05■□□□□ 0.48
SHMT2-208ENST00000553868 SULF1Q8IWU6 871 aa18.05■□□□□ 0.48
SHMT2-208ENST00000553868 DPF2Q92785 391 aa18.05■□□□□ 0.48
SHMT2-208ENST00000553868 METTL22Q9BUU2 404 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-208ENST00000553868 KCNQ5Q9NR82 932 aa18.05■□□□□ 0.48
SHMT2-208ENST00000553868 RANBP2P49792 3224 aaKnown RBP18.04■□□□□ 0.48
SHMT2-208ENST00000553868 NTSR2O95665 410 aa18.04■□□□□ 0.48
SHMT2-208ENST00000553868 DBNDD1Q9H9R9 158 aa18.04■□□□□ 0.48
SHMT2-208ENST00000553868 SCAF8Q9UPN6 1271 aaKnown RBP18.04■□□□□ 0.48
SHMT2-208ENST00000553868 DUOX1Q9NRD9 1551 aa18.04■□□□□ 0.48
SHMT2-208ENST00000553868 UBE2Q2LH0YL09 131 aa18.03■□□□□ 0.48
SHMT2-208ENST00000553868 KIF4BQ2VIQ3 1234 aa18.03■□□□□ 0.48
SHMT2-208ENST00000553868 ZBTB3Q9H5J0 574 aa18.03■□□□□ 0.48
SHMT2-208ENST00000553868 MAP3K15Q6ZN16 1313 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 RBBP6Q7Z6E9 1792 aaKnown RBP18.02■□□□□ 0.48
SHMT2-208ENST00000553868 GNAI2P04899 355 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 UBTFL1P0CB47 393 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-208ENST00000553868 TAF1P21675 1872 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 SP8Q8IXZ3 490 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 NLRP3Q96P20 1036 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 MEIS3Q99687 375 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 TRIM17Q9Y577 477 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 PCDHB15Q9Y5E8 787 aa18.02■□□□□ 0.48
SHMT2-208ENST00000553868 ERVV-1B6SEH8 477 aa18.01■□□□□ 0.47
SHMT2-208ENST00000553868 TM4SF4P48230 202 aa18.01■□□□□ 0.47
SHMT2-208ENST00000553868 HDAC1Q13547 482 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-208ENST00000553868 HSP90AB3PQ58FF7 597 aa18.01■□□□□ 0.47
SHMT2-208ENST00000553868 NOM1Q5C9Z4 860 aaKnown RBP18.01■□□□□ 0.47
SHMT2-208ENST00000553868 RPAP2Q8IXW5 612 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-208ENST00000553868 OTUD5Q96G74 571 aa18.01■□□□□ 0.47
SHMT2-208ENST00000553868 MYD88Q99836 296 aa18.01■□□□□ 0.47
SHMT2-208ENST00000553868 H0YGN5 161 aa18■□□□□ 0.47
SHMT2-208ENST00000553868 RIMBP2O15034 1052 aa18■□□□□ 0.47
SHMT2-208ENST00000553868 ANGEL2Q5VTE6 544 aaKnown RBP18■□□□□ 0.47
SHMT2-208ENST00000553868 C9orf78Q9NZ63 289 aaPredicted RBP18■□□□□ 0.47
SHMT2-208ENST00000553868 RTL9Q8NET4 1388 aa18■□□□□ 0.47
SHMT2-208ENST00000553868 PRAMEF18Q5VWM3 479 aa17.99■□□□□ 0.47
SHMT2-208ENST00000553868 OTOP1Q7RTM1 612 aa17.99■□□□□ 0.47
SHMT2-208ENST00000553868 ZNF34Q8IZ26 560 aa17.99■□□□□ 0.47
SHMT2-208ENST00000553868 USP44Q9H0E7 712 aa17.99■□□□□ 0.47
SHMT2-208ENST00000553868 LAMB2P55268 1798 aa17.99■□□□□ 0.47
SHMT2-208ENST00000553868 NEURL1BA8MQ27 555 aa17.98■□□□□ 0.47
SHMT2-208ENST00000553868 HMMRO75330 724 aa17.98■□□□□ 0.47
SHMT2-208ENST00000553868 BBOX1O75936 387 aa17.98■□□□□ 0.47
SHMT2-208ENST00000553868 DOK7Q18PE1 504 aa17.98■□□□□ 0.47
SHMT2-208ENST00000553868 CHRDL2Q6WN34 429 aa17.98■□□□□ 0.47
SHMT2-208ENST00000553868 GRM8O00222 908 aa17.97■□□□□ 0.47
SHMT2-208ENST00000553868 CWF19L2Q2TBE0 894 aaKnown RBP17.97■□□□□ 0.47
SHMT2-208ENST00000553868 ANKRD44Q8N8A2 993 aa17.97■□□□□ 0.47
SHMT2-208ENST00000553868 C1orf115Q9H7X2 142 aa17.97■□□□□ 0.47
SHMT2-208ENST00000553868 IGKV5-2P06315 115 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 RPS12P25398 132 aaKnown RBP17.96■□□□□ 0.47
SHMT2-208ENST00000553868 FKBP1BP68106 108 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 TCIRG1Q13488 830 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 SCARF1Q14162 830 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 GCKRQ14397 625 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 WASHC4Q2M389 1173 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 GIGYF2Q6Y7W6 1299 aaKnown RBP17.96■□□□□ 0.47
SHMT2-208ENST00000553868 CCDC191Q8NCU4 936 aa17.96■□□□□ 0.47
SHMT2-208ENST00000553868 CWC25Q9NXE8 425 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-208ENST00000553868 UTYO14607 1347 aa17.96■□□□□ 0.46
SHMT2-208ENST00000553868 SCN9AQ15858 1988 aa17.95■□□□□ 0.46
SHMT2-208ENST00000553868 ECE2O60344 883 aa17.95■□□□□ 0.46
SHMT2-208ENST00000553868 IGHDP01880 384 aa17.95■□□□□ 0.46
SHMT2-208ENST00000553868 HCLS1P14317 486 aaPredicted RBP17.95■□□□□ 0.46
SHMT2-208ENST00000553868 TRIM28Q13263 835 aaKnown RBP17.95■□□□□ 0.46
SHMT2-208ENST00000553868 SLC10A5Q5PT55 438 aa17.95■□□□□ 0.46
SHMT2-208ENST00000553868 CEP85Q6P2H3 762 aa17.95■□□□□ 0.46
SHMT2-208ENST00000553868 RBM27Q9P2N5 1060 aaKnown RBP17.95■□□□□ 0.46
SHMT2-208ENST00000553868 TTLL12Q14166 644 aaPredicted RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 134.5 ms