RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 IGF2BP3O00425 579 aaKnown RBP eCLIP16.84■□□□□ 0.29
VPS29-211ENST00000553128 ATP2B4P23634 1241 aa16.84■□□□□ 0.29
VPS29-211ENST00000553128 NF2P35240 595 aa16.84■□□□□ 0.29
VPS29-211ENST00000553128 CCDC152Q4G0S7 254 aa16.84■□□□□ 0.29
VPS29-211ENST00000553128 IFNL1Q8IU54 200 aa16.84■□□□□ 0.29
VPS29-211ENST00000553128 FBXW7Q969H0 707 aa16.84■□□□□ 0.29
VPS29-211ENST00000553128 ANGEL1Q9UNK9 670 aaKnown RBP16.84■□□□□ 0.29
VPS29-211ENST00000553128 INTS3Q68E01 1043 aaKnown RBP16.83■□□□□ 0.28
VPS29-211ENST00000553128 ARMC9Q7Z3E5 817 aa16.83■□□□□ 0.28
VPS29-211ENST00000553128 CD99L2Q8TCZ2 262 aa16.83■□□□□ 0.28
VPS29-211ENST00000553128 CLMNQ96JQ2 1002 aa16.83■□□□□ 0.28
VPS29-211ENST00000553128 MYD88Q99836 296 aa16.83■□□□□ 0.28
VPS29-211ENST00000553128 PHAXQ9H814 394 aaKnown RBP16.83■□□□□ 0.28
VPS29-211ENST00000553128 COLQQ9Y215 455 aaPredicted RBP16.83■□□□□ 0.28
VPS29-211ENST00000553128 PTPN22Q9Y2R2 807 aa16.83■□□□□ 0.28
VPS29-211ENST00000553128 PDE8AO60658 829 aa16.82■□□□□ 0.28
VPS29-211ENST00000553128 LMOD3Q0VAK6 560 aa16.82■□□□□ 0.28
VPS29-211ENST00000553128 TXNRD3Q86VQ6 643 aa16.82■□□□□ 0.28
VPS29-211ENST00000553128 ANKRD18AQ8IVF6 992 aa16.82■□□□□ 0.28
VPS29-211ENST00000553128 HYPKQ9NX55 129 aa16.82■□□□□ 0.28
VPS29-211ENST00000553128 TRIM35Q9UPQ4 493 aa16.82■□□□□ 0.28
VPS29-211ENST00000553128 MED23Q9ULK4 1368 aa16.81■□□□□ 0.28
VPS29-211ENST00000553128 ALDH1A1P00352 501 aa16.81■□□□□ 0.28
VPS29-211ENST00000553128 RIC3Q7Z5B4 369 aa16.81■□□□□ 0.28
VPS29-211ENST00000553128 CCDC146Q8IYE0 955 aa16.81■□□□□ 0.28
VPS29-211ENST00000553128 OGFOD1Q8N543 542 aa16.81■□□□□ 0.28
VPS29-211ENST00000553128 ZBED3Q96IU2 234 aaPredicted RBP16.81■□□□□ 0.28
VPS29-211ENST00000553128 RBBP6Q7Z6E9 1792 aaKnown RBP16.81■□□□□ 0.28
VPS29-211ENST00000553128 SSC5DA1L4H1 1573 aa16.81■□□□□ 0.28
VPS29-211ENST00000553128 MANSC4A6NHS7 340 aaPredicted RBP16.8■□□□□ 0.28
VPS29-211ENST00000553128 PCCAP05165 728 aaPredicted RBP16.8■□□□□ 0.28
VPS29-211ENST00000553128 HOXB7P09629 217 aa16.8■□□□□ 0.28
VPS29-211ENST00000553128 STRIP1Q5VSL9 837 aa16.8■□□□□ 0.28
VPS29-211ENST00000553128 DUSP27Q5VZP5 1158 aa16.8■□□□□ 0.28
VPS29-211ENST00000553128 ARMC5Q96C12 935 aa16.8■□□□□ 0.28
VPS29-211ENST00000553128 WNK4Q96J92 1243 aa16.8■□□□□ 0.28
VPS29-211ENST00000553128 MINPP1Q9UNW1 487 aa16.8■□□□□ 0.28
VPS29-211ENST00000553128 KIAA0100Q14667 2235 aaKnown RBP16.8■□□□□ 0.28
VPS29-211ENST00000553128 KLRK1P26718 216 aa16.79■□□□□ 0.28
VPS29-211ENST00000553128 GJA5P36382 358 aa16.79■□□□□ 0.28
VPS29-211ENST00000553128 CRHR2Q13324 411 aa16.79■□□□□ 0.28
VPS29-211ENST00000553128 APOBEC3FQ8IUX4 373 aaKnown RBP16.79■□□□□ 0.28
VPS29-211ENST00000553128 KIAA0825Q8IV33 1275 aa16.79■□□□□ 0.28
VPS29-211ENST00000553128 SLC10A4Q96EP9 437 aa16.79■□□□□ 0.28
VPS29-211ENST00000553128 PCDHAC2Q9Y5I4 1007 aa16.79■□□□□ 0.28
VPS29-211ENST00000553128 CCT4P50991 539 aaKnown RBP16.78■□□□□ 0.28
VPS29-211ENST00000553128 GOLGA2Q08379 1002 aa16.78■□□□□ 0.28
VPS29-211ENST00000553128 CCDC191Q8NCU4 936 aa16.78■□□□□ 0.28
VPS29-211ENST00000553128 RANBP2P49792 3224 aaKnown RBP16.77■□□□□ 0.28
VPS29-211ENST00000553128 MYO3BQ8WXR4 1341 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 INHBEP58166 350 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 MAP3K11Q16584 847 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 ERO1AQ96HE7 468 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 PTPN18Q99952 460 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 COA1Q9GZY4 146 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 DEFB129Q9H1M3 183 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 GREM2Q9H772 168 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 EFCC1Q9HA90 598 aa16.77■□□□□ 0.28
VPS29-211ENST00000553128 CWC25Q9NXE8 425 aaPredicted RBP16.77■□□□□ 0.28
VPS29-211ENST00000553128 SPEF2Q9C093 1822 aa16.76■□□□□ 0.27
VPS29-211ENST00000553128 ZBTB48P10074 688 aaPredicted RBP16.76■□□□□ 0.27
VPS29-211ENST00000553128 HSP90B1P14625 803 aaKnown RBP16.76■□□□□ 0.27
VPS29-211ENST00000553128 CTSWP56202 376 aa16.76■□□□□ 0.27
VPS29-211ENST00000553128 TTLL5Q6EMB2 1281 aa16.76■□□□□ 0.27
VPS29-211ENST00000553128 BSDC1Q9NW68 430 aaPredicted RBP16.76■□□□□ 0.27
VPS29-211ENST00000553128 AOX1Q06278 1338 aa16.75■□□□□ 0.27
VPS29-211ENST00000553128 GTF2IP78347 998 aa16.75■□□□□ 0.27
VPS29-211ENST00000553128 TTLL11Q8NHH1 800 aa16.75■□□□□ 0.27
VPS29-211ENST00000553128 ZNF333Q96JL9 665 aa16.75■□□□□ 0.27
VPS29-211ENST00000553128 CDC5LQ99459 802 aaKnown RBP16.75■□□□□ 0.27
VPS29-211ENST00000553128 MBIPQ9NS73 344 aa16.75■□□□□ 0.27
VPS29-211ENST00000553128 ELL2O00472 640 aaPredicted RBP16.74■□□□□ 0.27
VPS29-211ENST00000553128 SP3Q02447 781 aa16.74■□□□□ 0.27
VPS29-211ENST00000553128 CERS5Q8N5B7 392 aa16.74■□□□□ 0.27
VPS29-211ENST00000553128 METTL22Q9BUU2 404 aaPredicted RBP16.74■□□□□ 0.27
VPS29-211ENST00000553128 LAMB1P07942 1786 aa16.74■□□□□ 0.27
VPS29-211ENST00000553128 CLRN2A0PK11 232 aa16.73■□□□□ 0.27
VPS29-211ENST00000553128 H0YGN5 161 aa16.73■□□□□ 0.27
VPS29-211ENST00000553128 MYCP01106 439 aaPredicted RBP16.73■□□□□ 0.27
VPS29-211ENST00000553128 NBPF12Q5TAG4 269 aaPredicted RBP16.73■□□□□ 0.27
VPS29-211ENST00000553128 OTUD5Q96G74 571 aa16.73■□□□□ 0.27
VPS29-211ENST00000553128 COL1A1P02452 1464 aaPredicted RBP16.73■□□□□ 0.27
VPS29-211ENST00000553128 IGKV5-2P06315 115 aa16.72■□□□□ 0.27
VPS29-211ENST00000553128 TMEM106CQ9BVX2 250 aa16.72■□□□□ 0.27
VPS29-211ENST00000553128 PTCH2Q9Y6C5 1203 aa16.72■□□□□ 0.27
VPS29-211ENST00000553128 TRIOBPQ9H2D6 2365 aa16.71■□□□□ 0.27
VPS29-211ENST00000553128 TESPA1A2RU30 521 aaPredicted RBP16.71■□□□□ 0.27
VPS29-211ENST00000553128 SNAP23O00161 211 aa16.71■□□□□ 0.27
VPS29-211ENST00000553128 PPP1R12BO60237 982 aaPredicted RBP16.71■□□□□ 0.27
VPS29-211ENST00000553128 USP2O75604 605 aaPredicted RBP16.71■□□□□ 0.27
VPS29-211ENST00000553128 MMP14P50281 582 aa16.71■□□□□ 0.27
VPS29-211ENST00000553128 DLGAP5Q15398 846 aa16.71■□□□□ 0.27
VPS29-211ENST00000553128 LEMD3Q9Y2U8 911 aa16.71■□□□□ 0.27
VPS29-211ENST00000553128 COL6A3P12111 3177 aa16.71■□□□□ 0.26
VPS29-211ENST00000553128 ZNF804BA4D1E1 1349 aa16.7■□□□□ 0.26
VPS29-211ENST00000553128 F8W031 263 aaPredicted RBP16.7■□□□□ 0.26
VPS29-211ENST00000553128 MAP3K2Q9Y2U5 619 aa16.7■□□□□ 0.26
VPS29-211ENST00000553128 ZNF853P0CG23 659 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 SLC9C1Q4G0N8 1177 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 OTUD7BQ6GQQ9 843 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms