RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ISCA1Q9BUE6 129 aa18.99■□□□□ 0.63
VPS29-209ENST00000551655 LAMB1P07942 1786 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 IRS4O14654 1257 aaPredicted RBP18.98■□□□□ 0.63
VPS29-209ENST00000551655 CRHR2Q13324 411 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 KRT24Q2M2I5 525 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 ZNF333Q96JL9 665 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 PLEKHF1Q96S99 279 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 TMEM106CQ9BVX2 250 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 EFCC1Q9HA90 598 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 CLSPNQ9HAW4 1339 aa18.98■□□□□ 0.63
VPS29-209ENST00000551655 MANSC4A6NHS7 340 aaPredicted RBP18.97■□□□□ 0.63
VPS29-209ENST00000551655 CCDC85AQ96PX6 553 aaPredicted RBP18.97■□□□□ 0.63
VPS29-209ENST00000551655 RBM27Q9P2N5 1060 aaKnown RBP18.97■□□□□ 0.63
VPS29-209ENST00000551655 FBXW7Q969H0 707 aa18.96■□□□□ 0.63
VPS29-209ENST00000551655 WNK4Q96J92 1243 aa18.96■□□□□ 0.63
VPS29-209ENST00000551655 CHPF2Q9P2E5 772 aa18.96■□□□□ 0.63
VPS29-209ENST00000551655 SSC5DA1L4H1 1573 aa18.96■□□□□ 0.63
VPS29-209ENST00000551655 NEFMP07197 916 aa18.95■□□□□ 0.62
VPS29-209ENST00000551655 DACT2Q5SW24 774 aa18.95■□□□□ 0.62
VPS29-209ENST00000551655 SLC10A4Q96EP9 437 aa18.95■□□□□ 0.62
VPS29-209ENST00000551655 SLC4A8Q2Y0W8 1093 aa18.94■□□□□ 0.62
VPS29-209ENST00000551655 PLBD2Q8NHP8 589 aa18.94■□□□□ 0.62
VPS29-209ENST00000551655 PTCH2Q9Y6C5 1203 aa18.94■□□□□ 0.62
VPS29-209ENST00000551655 ZSWIM8A7E2V4 1837 aa18.94■□□□□ 0.62
VPS29-209ENST00000551655 CUL9Q8IWT3 2517 aa18.94■□□□□ 0.62
VPS29-209ENST00000551655 SPEF2Q9C093 1822 aa18.93■□□□□ 0.62
VPS29-209ENST00000551655 GJA5P36382 358 aa18.93■□□□□ 0.62
VPS29-209ENST00000551655 SP3Q02447 781 aa18.93■□□□□ 0.62
VPS29-209ENST00000551655 PODNQ7Z5L7 613 aa18.93■□□□□ 0.62
VPS29-209ENST00000551655 INHBEP58166 350 aa18.92■□□□□ 0.62
VPS29-209ENST00000551655 SLC9C1Q4G0N8 1177 aa18.92■□□□□ 0.62
VPS29-209ENST00000551655 JARID2Q92833 1246 aaPredicted RBP18.92■□□□□ 0.62
VPS29-209ENST00000551655 PTPN18Q99952 460 aa18.92■□□□□ 0.62
VPS29-209ENST00000551655 XDHP47989 1333 aa18.92■□□□□ 0.62
VPS29-209ENST00000551655 ZBTB48P10074 688 aaPredicted RBP18.91■□□□□ 0.62
VPS29-209ENST00000551655 ANKRD13DQ6ZTN6 518 aa18.91■□□□□ 0.62
VPS29-209ENST00000551655 OGFOD1Q8N543 542 aa18.91■□□□□ 0.62
VPS29-209ENST00000551655 TRIM26Q12899 539 aaPredicted RBP18.9■□□□□ 0.62
VPS29-209ENST00000551655 APOBEC3FQ8IUX4 373 aaKnown RBP18.9■□□□□ 0.62
VPS29-209ENST00000551655 ATP2B4P23634 1241 aa18.89■□□□□ 0.61
VPS29-209ENST00000551655 KIAA0825Q8IV33 1275 aa18.89■□□□□ 0.61
VPS29-209ENST00000551655 SH3TC2Q8TF17 1288 aa18.89■□□□□ 0.61
VPS29-209ENST00000551655 OTOFQ9HC10 1997 aa18.88■□□□□ 0.61
VPS29-209ENST00000551655 TXNRD3Q86VQ6 643 aa18.88■□□□□ 0.61
VPS29-209ENST00000551655 ZBED3Q96IU2 234 aaPredicted RBP18.88■□□□□ 0.61
VPS29-209ENST00000551655 DEFB129Q9H1M3 183 aa18.88■□□□□ 0.61
VPS29-209ENST00000551655 PCDHAC2Q9Y5I4 1007 aa18.88■□□□□ 0.61
VPS29-209ENST00000551655 MAPK8IP3Q9UPT6 1336 aa18.88■□□□□ 0.61
VPS29-209ENST00000551655 MAP3K11Q16584 847 aa18.87■□□□□ 0.61
VPS29-209ENST00000551655 DPF3Q92784 378 aa18.87■□□□□ 0.61
VPS29-209ENST00000551655 MED23Q9ULK4 1368 aa18.87■□□□□ 0.61
VPS29-209ENST00000551655 LAMA3Q16787 3333 aa18.87■□□□□ 0.61
VPS29-209ENST00000551655 STRIP1Q5VSL9 837 aa18.86■□□□□ 0.61
VPS29-209ENST00000551655 ANKRD18AQ8IVF6 992 aa18.86■□□□□ 0.61
VPS29-209ENST00000551655 ZBTB38Q8NAP3 1195 aaPredicted RBP18.86■□□□□ 0.61
VPS29-209ENST00000551655 SHISA4Q96DD7 197 aa18.86■□□□□ 0.61
VPS29-209ENST00000551655 COL1A1P02452 1464 aaPredicted RBP18.85■□□□□ 0.61
VPS29-209ENST00000551655 AOX1Q06278 1338 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 MYO3BQ8WXR4 1341 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 SOX1O00570 391 aaPredicted RBP18.85■□□□□ 0.61
VPS29-209ENST00000551655 KLRK1P26718 216 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 RIPK4P57078 832 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 CCDC152Q4G0S7 254 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 HDGFL1Q5TGJ6 251 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 OTUD7BQ6GQQ9 843 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 NBPF11Q86T75 865 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 ARHGAP39Q9C0H5 1083 aa18.85■□□□□ 0.61
VPS29-209ENST00000551655 ECM29Q5VYK3 1845 aa18.84■□□□□ 0.61
VPS29-209ENST00000551655 ECM2O94769 699 aaPredicted RBP18.84■□□□□ 0.61
VPS29-209ENST00000551655 TRIM28Q13263 835 aaKnown RBP18.84■□□□□ 0.61
VPS29-209ENST00000551655 PRO3102Q9H379 93 aa18.84■□□□□ 0.61
VPS29-209ENST00000551655 CLRN2A0PK11 232 aa18.83■□□□□ 0.6
VPS29-209ENST00000551655 PPP1R12BO60237 982 aaPredicted RBP18.83■□□□□ 0.6
VPS29-209ENST00000551655 NBPF12Q5TAG4 269 aaPredicted RBP18.83■□□□□ 0.6
VPS29-209ENST00000551655 CNKSR2Q8WXI2 1034 aa18.83■□□□□ 0.6
VPS29-209ENST00000551655 LRCH3Q96II8 777 aa18.83■□□□□ 0.6
VPS29-209ENST00000551655 TESPA1A2RU30 521 aaPredicted RBP18.82■□□□□ 0.6
VPS29-209ENST00000551655 MTFR1Q15390 333 aa18.82■□□□□ 0.6
VPS29-209ENST00000551655 TTLL5Q6EMB2 1281 aa18.82■□□□□ 0.6
VPS29-209ENST00000551655 MYD88Q99836 296 aa18.82■□□□□ 0.6
VPS29-209ENST00000551655 ELP3Q9H9T3 547 aa18.82■□□□□ 0.6
VPS29-209ENST00000551655 BABAM1Q9NWV8 329 aa18.82■□□□□ 0.6
VPS29-209ENST00000551655 MINPP1Q9UNW1 487 aa18.82■□□□□ 0.6
VPS29-209ENST00000551655 LAS1LQ9Y4W2 734 aaKnown RBP18.82■□□□□ 0.6
VPS29-209ENST00000551655 PDE8AO60658 829 aa18.81■□□□□ 0.6
VPS29-209ENST00000551655 USP2O75604 605 aaPredicted RBP18.81■□□□□ 0.6
VPS29-209ENST00000551655 CCT4P50991 539 aaKnown RBP18.81■□□□□ 0.6
VPS29-209ENST00000551655 GTF2IP78347 998 aa18.81■□□□□ 0.6
VPS29-209ENST00000551655 TAF1CQ15572 869 aaPredicted RBP18.81■□□□□ 0.6
VPS29-209ENST00000551655 BRI3BPQ8WY22 251 aa18.81■□□□□ 0.6
VPS29-209ENST00000551655 MS4A4AQ96JQ5 239 aa18.81■□□□□ 0.6
VPS29-209ENST00000551655 COA1Q9GZY4 146 aa18.81■□□□□ 0.6
VPS29-209ENST00000551655 DBF4Q9UBU7 674 aaPredicted RBP18.81■□□□□ 0.6
VPS29-209ENST00000551655 DLGAP5Q15398 846 aa18.8■□□□□ 0.6
VPS29-209ENST00000551655 RIC3Q7Z5B4 369 aa18.8■□□□□ 0.6
VPS29-209ENST00000551655 OPTNQ96CV9 577 aa18.8■□□□□ 0.6
VPS29-209ENST00000551655 UNC80Q8N2C7 3258 aa18.8■□□□□ 0.6
VPS29-209ENST00000551655 PCCAP05165 728 aaPredicted RBP18.79■□□□□ 0.6
VPS29-209ENST00000551655 IREB2P48200 963 aaKnown RBP18.79■□□□□ 0.6
VPS29-209ENST00000551655 FAM43AQ8N2R8 423 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms