RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SOX18P35713 384 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 JAG1P78504 1218 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 ADAMTS19Q8TE59 1207 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 C7orf69Q9H7B7 122 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 KLK14Q9P0G3 267 aa6.28□□□□□ -1.4
LIMA1-206ENST00000550611 ADAMTSL3P82987 1691 aa6.27□□□□□ -1.41
LIMA1-206ENST00000550611 J3QW42 95 aa6.27□□□□□ -1.41
LIMA1-206ENST00000550611 GHRHP01286 108 aa6.27□□□□□ -1.41
LIMA1-206ENST00000550611 PSAPP07602 524 aa6.27□□□□□ -1.41
LIMA1-206ENST00000550611 UTP4Q969X6 686 aaKnown RBP6.27□□□□□ -1.41
LIMA1-206ENST00000550611 FAM46AQ96IP4 442 aaKnown RBP6.27□□□□□ -1.41
LIMA1-206ENST00000550611 RBSNQ9H1K0 784 aa6.27□□□□□ -1.41
LIMA1-206ENST00000550611 TNIKQ9UKE5 1360 aa6.27□□□□□ -1.41
LIMA1-206ENST00000550611 ABCC2Q92887 1545 aa6.26□□□□□ -1.41
LIMA1-206ENST00000550611 MAP3K4Q9Y6R4 1608 aa6.26□□□□□ -1.41
LIMA1-206ENST00000550611 PRKCSHP14314 528 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-206ENST00000550611 DGKZQ13574 1117 aa6.26□□□□□ -1.41
LIMA1-206ENST00000550611 TRIM42Q8IWZ5 723 aa6.26□□□□□ -1.41
LIMA1-206ENST00000550611 RTCBQ9Y3I0 505 aaKnown RBP6.26□□□□□ -1.41
LIMA1-206ENST00000550611 PPME1Q9Y570 386 aa6.26□□□□□ -1.41
LIMA1-206ENST00000550611 TEX14Q8IWB6 1497 aa6.26□□□□□ -1.41
LIMA1-206ENST00000550611 OPLAHO14841 1288 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 XYLBO75191 536 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 RASA1P20936 1047 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 GALNT11Q8NCW6 608 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 MYRFLQ96LU7 910 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 CARMIL1Q5VZK9 1371 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 UHRF1BP1LA0JNW5 1464 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 CUL7Q14999 1698 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 KIF27Q86VH2 1401 aa6.25□□□□□ -1.41
LIMA1-206ENST00000550611 HMX2A2RU54 273 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 UBAP1LF5GYI3 381 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 MMP20O60882 483 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 WISP1O95388 367 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 CD68P34810 354 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-206ENST00000550611 CEBPAP49715 358 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-206ENST00000550611 MLECQ14165 292 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 C11orf91Q3C1V1 193 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 ACAD11Q709F0 780 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 CLEC10AQ8IUN9 316 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 MYO19Q96H55 970 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 NSUN5Q96P11 429 aaKnown RBP6.24□□□□□ -1.41
LIMA1-206ENST00000550611 QTRT2Q9H974 415 aaKnown RBP6.24□□□□□ -1.41
LIMA1-206ENST00000550611 TRIM33Q9UPN9 1127 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 MADDQ8WXG6 1647 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 CARMIL2Q6F5E8 1435 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 CD109Q6YHK3 1445 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 UACAQ9BZF9 1416 aa6.24□□□□□ -1.41
LIMA1-206ENST00000550611 TM4SF5O14894 197 aa6.23□□□□□ -1.41
LIMA1-206ENST00000550611 HDGFL1Q5TGJ6 251 aa6.23□□□□□ -1.41
LIMA1-206ENST00000550611 HINFPQ9BQA5 517 aa6.23□□□□□ -1.41
LIMA1-206ENST00000550611 FAM83CQ9BQN1 747 aa6.23□□□□□ -1.41
LIMA1-206ENST00000550611 KRTAP4-2Q9BYR5 136 aa6.23□□□□□ -1.41
LIMA1-206ENST00000550611 KDM5BQ9UGL1 1544 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 POM121CA8CG34 1229 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 HSPA1LP34931 641 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 TPRNQ4KMQ1 711 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 OGFOD2Q6N063 350 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 KIAA1211Q6ZU35 1233 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 FAM20CQ8IXL6 584 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 POU5F2Q8N7G0 328 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 SHKBP1Q8TBC3 707 aa6.22□□□□□ -1.41
LIMA1-206ENST00000550611 DISP1Q96F81 1524 aa6.21□□□□□ -1.42
LIMA1-206ENST00000550611 SRCAPQ6ZRS2 3230 aa6.21□□□□□ -1.42
LIMA1-206ENST00000550611 ABI1Q8IZP0 508 aa6.21□□□□□ -1.42
LIMA1-206ENST00000550611 KCNK4Q9NYG8 393 aa6.21□□□□□ -1.42
LIMA1-206ENST00000550611 RIMS1Q86UR5 1692 aaKnown RBP6.2□□□□□ -1.42
LIMA1-206ENST00000550611 LINC01387J3KSC0 135 aa6.2□□□□□ -1.42
LIMA1-206ENST00000550611 FOXO3O43524 673 aa6.2□□□□□ -1.42
LIMA1-206ENST00000550611 KLHL23Q8NBE8 558 aa6.2□□□□□ -1.42
LIMA1-206ENST00000550611 POM121Q96HA1 1249 aa6.2□□□□□ -1.42
LIMA1-206ENST00000550611 USP20Q9Y2K6 914 aa6.2□□□□□ -1.42
LIMA1-206ENST00000550611 KCNMB2Q9Y691 235 aa6.2□□□□□ -1.42
LIMA1-206ENST00000550611 BCORL1Q5H9F3 1711 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 STRCQ7RTU9 1775 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 YEATS2Q9ULM3 1422 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 ARID3CA6NKF2 412 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 RAD21O60216 631 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 C8AP07357 584 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 PIP4K2BP78356 416 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 LARP1Q6PKG0 1096 aaKnown RBP6.19□□□□□ -1.42
LIMA1-206ENST00000550611 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-206ENST00000550611 CBLL1Q75N03 491 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 RGL4Q8IZJ4 473 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 CMTR1Q8N1G2 835 aaKnown RBP6.19□□□□□ -1.42
LIMA1-206ENST00000550611 HIF3AQ9Y2N7 669 aa6.19□□□□□ -1.42
LIMA1-206ENST00000550611 WEE1P30291 646 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 DPYDQ12882 1025 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 PTK7Q13308 1070 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 DUOXA2Q1HG44 320 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 BEND4Q6ZU67 534 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 NLRP13Q86W25 1043 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 ASIC4Q96FT7 647 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.18□□□□□ -1.42
LIMA1-206ENST00000550611 PIM2Q9P1W9 311 aa6.18□□□□□ -1.42
LIMA1-206ENST00000550611 RGS17Q9UGC6 210 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-206ENST00000550611 MAGI3Q5TCQ9 1506 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 UGGT2Q9NYU1 1516 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 CDC27P30260 824 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 ANKRD34AQ69YU3 496 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms