RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 SLU7O95391 586 aaKnown RBP10.89□□□□□ -0.67
PTCH1-220ENST00000550136 MRPL12P52815 198 aaKnown RBP10.89□□□□□ -0.67
PTCH1-220ENST00000550136 RASA3Q14644 834 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 CEP135Q66GS9 1140 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 LMOD2Q6P5Q4 547 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.89□□□□□ -0.67
PTCH1-220ENST00000550136 SPATA31A1Q5TZJ5 1347 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 EME2A4GXA9 379 aaPredicted RBP10.89□□□□□ -0.67
PTCH1-220ENST00000550136 NF2P35240 595 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 DUSP27Q5VZP5 1158 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 KCNV1Q6PIU1 500 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 ANKRD18AQ8IVF6 992 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 PDZRN3Q9UPQ7 1066 aa10.89□□□□□ -0.67
PTCH1-220ENST00000550136 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.89□□□□□ -0.67
PTCH1-220ENST00000550136 RGPD8O14715 1765 aaPredicted RBP10.88□□□□□ -0.67
PTCH1-220ENST00000550136 GPTP24298 496 aa10.88□□□□□ -0.67
PTCH1-220ENST00000550136 EIF5P55010 431 aaKnown RBP10.88□□□□□ -0.67
PTCH1-220ENST00000550136 CWC27Q6UX04 472 aaKnown RBP10.88□□□□□ -0.67
PTCH1-220ENST00000550136 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.88□□□□□ -0.67
PTCH1-220ENST00000550136 TMCO3Q6UWJ1 677 aa10.88□□□□□ -0.67
PTCH1-220ENST00000550136 ARGLU1Q9NWB6 273 aaPredicted RBP10.88□□□□□ -0.67
PTCH1-220ENST00000550136 CLIP2Q9UDT6 1046 aa10.88□□□□□ -0.67
PTCH1-220ENST00000550136 ADAM21Q9UKJ8 722 aa10.88□□□□□ -0.67
PTCH1-220ENST00000550136 TRPM3Q9HCF6 1732 aaPredicted RBP10.88□□□□□ -0.67
PTCH1-220ENST00000550136 RGPD3A6NKT7 1758 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 RGPD4Q7Z3J3 1758 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 RBM47A0AV96 593 aaKnown RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 ECM2O94769 699 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 ERLIN2O94905 339 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 NAT1P18440 290 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 RDXP35241 583 aaKnown RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 SCRN1Q12765 414 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 HHATQ5VTY9 493 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 MYLK4Q86YV6 388 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 NECTIN2Q92692 538 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 KAT2BQ92831 832 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 ARPC5LQ9BPX5 153 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 JPH2Q9BR39 696 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 NSFL1CQ9UNZ2 370 aaKnown RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 ALS2Q96Q42 1657 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 MYOM1P52179 1685 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 PES1O00541 588 aaKnown RBP10.87□□□□□ -0.67
PTCH1-220ENST00000550136 ALDH1B1P30837 517 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 DDR1Q08345 913 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 PLEKHG4BQ96PX9 1271 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 LMCD1Q9NZU5 365 aa10.87□□□□□ -0.67
PTCH1-220ENST00000550136 PDE3AQ14432 1141 aa10.86□□□□□ -0.67
PTCH1-220ENST00000550136 MCM6Q14566 821 aa10.86□□□□□ -0.67
PTCH1-220ENST00000550136 PLEKHO1Q53GL0 409 aaPredicted RBP10.86□□□□□ -0.67
PTCH1-220ENST00000550136 CRYBG1Q9Y4K1 1723 aa10.86□□□□□ -0.67
PTCH1-220ENST00000550136 CD2BP2O95400 341 aaKnown RBP10.85□□□□□ -0.67
PTCH1-220ENST00000550136 RAB27AP51159 221 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 SMC1AQ14683 1233 aaKnown RBP10.85□□□□□ -0.67
PTCH1-220ENST00000550136 ARMC3Q5W041 872 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 WDR63Q8IWG1 891 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 IRX2Q9BZI1 471 aaPredicted RBP10.85□□□□□ -0.67
PTCH1-220ENST00000550136 IFT57Q9NWB7 429 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 CEP126Q9P2H0 1117 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 ELP1O95163 1332 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 PREPLQ4J6C6 727 aaPredicted RBP10.85□□□□□ -0.67
PTCH1-220ENST00000550136 BARGINQ6ZT62 677 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 KCNV2Q8TDN2 545 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 DDX11Q96FC9 970 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 ANKARQ7Z5J8 1434 aa10.85□□□□□ -0.67
PTCH1-220ENST00000550136 A0A1B0GUA9 196 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 GIGYF1O75420 1035 aaPredicted RBP10.84□□□□□ -0.67
PTCH1-220ENST00000550136 RLBP1P12271 317 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 TPD52L1Q16890 204 aaPredicted RBP10.84□□□□□ -0.67
PTCH1-220ENST00000550136 CCDC178Q5BJE1 867 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 ZNF280DQ6N043 979 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 PARD3BQ8TEW8 1205 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 IQCGQ9H095 443 aaKnown RBP10.84□□□□□ -0.67
PTCH1-220ENST00000550136 ZCCHC17Q9NP64 241 aaKnown RBP10.84□□□□□ -0.67
PTCH1-220ENST00000550136 CCDC171Q6TFL3 1326 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 ZSCAN9O15535 394 aaPredicted RBP10.84□□□□□ -0.67
PTCH1-220ENST00000550136 PYGLP06737 847 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 GCKP35557 465 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 FOXR1Q6PIV2 292 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 FILIP1Q7Z7B0 1213 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 NME8Q8N427 588 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 C3orf20Q8ND61 904 aa10.84□□□□□ -0.67
PTCH1-220ENST00000550136 PTGER2P43116 358 aa10.83□□□□□ -0.68
PTCH1-220ENST00000550136 GET4Q7L5D6 327 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-220ENST00000550136 PRDM11Q9NQV5 511 aa10.83□□□□□ -0.68
PTCH1-220ENST00000550136 ZCRB1Q8TBF4 217 aaKnown RBP10.83□□□□□ -0.68
PTCH1-220ENST00000550136 FAM163AQ96GL9 167 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-220ENST00000550136 CCDC34Q96HJ3 373 aa10.83□□□□□ -0.68
PTCH1-220ENST00000550136 ODF2LQ9ULJ1 636 aa10.83□□□□□ -0.68
PTCH1-220ENST00000550136 YTHDC2Q9H6S0 1430 aaKnown RBP10.83□□□□□ -0.68
PTCH1-220ENST00000550136 DLC1Q96QB1 1528 aa10.83□□□□□ -0.68
PTCH1-220ENST00000550136 SNX1Q13596 522 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 AGAP3Q96P47 875 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 SYT17Q9BSW7 474 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 THUMPD2Q9BTF0 503 aaKnown RBP10.82□□□□□ -0.68
PTCH1-220ENST00000550136 KIF9Q9HAQ2 790 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 AATKQ6ZMQ8 1374 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 PTGS1P23219 599 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 ZNF579Q8NAF0 562 aaKnown RBP10.82□□□□□ -0.68
PTCH1-220ENST00000550136 MRFAP1L1Q96HT8 127 aa10.82□□□□□ -0.68
PTCH1-220ENST00000550136 ADGRF5Q8IZF2 1346 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms