RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 CDC37L1Q7L3B6 337 aa9.1□□□□□ -0.95
PTCH1-219ENST00000549678 ARHGAP45Q92619 1136 aa9.1□□□□□ -0.95
PTCH1-219ENST00000549678 WBP1LQ9NX94 342 aa9.1□□□□□ -0.95
PTCH1-219ENST00000549678 TLL2Q9Y6L7 1015 aa9.1□□□□□ -0.95
PTCH1-219ENST00000549678 ZNF609O15014 1411 aa9.1□□□□□ -0.95
PTCH1-219ENST00000549678 WDR33Q9C0J8 1336 aaKnown RBP9.09□□□□□ -0.95
PTCH1-219ENST00000549678 PSMD14O00487 310 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 ECE2O60344 883 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 GNAI3P08754 354 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 MS4A1P11836 297 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 TRIM27P14373 513 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 MAP2K2P36507 400 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 CHRNDQ07001 517 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 EPHA10Q5JZY3 1008 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 MICALL2Q8IY33 904 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 ZNF594Q96JF6 807 aaPredicted RBP9.09□□□□□ -0.95
PTCH1-219ENST00000549678 MINPP1Q9UNW1 487 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 LEMD3Q9Y2U8 911 aa9.09□□□□□ -0.95
PTCH1-219ENST00000549678 ZNF804BA4D1E1 1349 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 UTYO14607 1347 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 CELF2O95319 508 aaKnown RBP9.08□□□□□ -0.96
PTCH1-219ENST00000549678 VIL1P09327 827 aaKnown RBP9.08□□□□□ -0.96
PTCH1-219ENST00000549678 MMP14P50281 582 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 CST9Q5W186 159 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 PODNQ7Z5L7 613 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 SAPCD2Q86UD0 394 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 ITPRIPQ8IWB1 547 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 DZIP1LQ8IYY4 767 aaKnown RBP9.08□□□□□ -0.96
PTCH1-219ENST00000549678 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.08□□□□□ -0.96
PTCH1-219ENST00000549678 AGBL3Q8NEM8 1001 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 TRPM4Q8TD43 1214 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 CAPNS2Q96L46 248 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 USP44Q9H0E7 712 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 LRRFIP2Q9Y608 721 aaKnown RBP9.08□□□□□ -0.96
PTCH1-219ENST00000549678 MED23Q9ULK4 1368 aa9.08□□□□□ -0.96
PTCH1-219ENST00000549678 TRAF5O00463 557 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 FOXN1O15353 648 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 CA12O43570 354 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 TAF5LO75529 589 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 HIRAP54198 1017 aaPredicted RBP9.07□□□□□ -0.96
PTCH1-219ENST00000549678 METTL24Q5JXM2 366 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 INTS3Q68E01 1043 aaKnown RBP9.07□□□□□ -0.96
PTCH1-219ENST00000549678 TMEM57Q8N5G2 664 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 HELBQ8NG08 1087 aaPredicted RBP9.07□□□□□ -0.96
PTCH1-219ENST00000549678 MEIS3Q99687 375 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 BEGAINQ9BUH8 593 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 GLIS2Q9BZE0 524 aaPredicted RBP9.07□□□□□ -0.96
PTCH1-219ENST00000549678 RCAN3Q9UKA8 241 aa9.07□□□□□ -0.96
PTCH1-219ENST00000549678 THSD7BQ9C0I4 1608 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 PSME4Q14997 1843 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 GNAI2P04899 355 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 ZNF280AP59817 542 aaPredicted RBP9.06□□□□□ -0.96
PTCH1-219ENST00000549678 RABL6Q3YEC7 729 aaPredicted RBP9.06□□□□□ -0.96
PTCH1-219ENST00000549678 RSBN1LQ6PCB5 846 aaPredicted RBP9.06□□□□□ -0.96
PTCH1-219ENST00000549678 PAXIP1Q6ZW49 1069 aaPredicted RBP9.06□□□□□ -0.96
PTCH1-219ENST00000549678 ZNF804AQ7Z570 1209 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 VPS37DQ86XT2 251 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 ANKRD44Q8N8A2 993 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 DCPSQ96C86 337 aaKnown RBP9.06□□□□□ -0.96
PTCH1-219ENST00000549678 SIL1Q9H173 461 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 TNNQ9UQP3 1299 aa9.06□□□□□ -0.96
PTCH1-219ENST00000549678 ZBTB12Q9Y330 459 aaPredicted RBP9.06□□□□□ -0.96
PTCH1-219ENST00000549678 MROH5Q6ZUA9 1318 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 MYO3BQ8WXR4 1341 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 MYH13Q9UKX3 1938 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 SCN9AQ15858 1988 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 USP17L3A6NCW0 530 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 USP17L4A6NCW7 530 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 FRAT2O75474 233 aaPredicted RBP9.05□□□□□ -0.96
PTCH1-219ENST00000549678 NOGQ13253 232 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 KIF4BQ2VIQ3 1234 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 TBC1D10BQ4KMP7 808 aaPredicted RBP9.05□□□□□ -0.96
PTCH1-219ENST00000549678 USP17L1Q7RTZ2 530 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 SAMD7Q7Z3H4 446 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 KRT26Q7Z3Y9 468 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 SULF1Q8IWU6 871 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 KLHDC4Q8TBB5 520 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 KAZALD1Q96I82 304 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 COA1Q9GZY4 146 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 PITPNM2Q9BZ72 1349 aa9.05□□□□□ -0.96
PTCH1-219ENST00000549678 POLR2AP24928 1970 aaKnown RBP9.04□□□□□ -0.96
PTCH1-219ENST00000549678 SHTN1A0MZ66 631 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 SRGAP3O43295 1099 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 USP17L8P0C7I0 530 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 HSPA8P11142 646 aaKnown RBP9.04□□□□□ -0.96
PTCH1-219ENST00000549678 FMR1Q06787 632 aaKnown RBP eCLIP9.04□□□□□ -0.96
PTCH1-219ENST00000549678 OS9Q13438 667 aaPredicted RBP9.04□□□□□ -0.96
PTCH1-219ENST00000549678 LRRC24Q50LG9 513 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 CAVIN4Q5BKX8 364 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 STRIP1Q5VSL9 837 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 CYP4F22Q6NT55 531 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 USP48Q86UV5 1035 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 GMLQ99445 158 aa9.04□□□□□ -0.96
PTCH1-219ENST00000549678 PUS3Q9BZE2 481 aaKnown RBP9.04□□□□□ -0.96
PTCH1-219ENST00000549678 SNAP23O00161 211 aa9.03□□□□□ -0.96
PTCH1-219ENST00000549678 EYA2O00167 538 aa9.03□□□□□ -0.96
PTCH1-219ENST00000549678 IFIT1P09914 478 aaKnown RBP9.03□□□□□ -0.96
PTCH1-219ENST00000549678 SLC5A1P13866 664 aa9.03□□□□□ -0.96
PTCH1-219ENST00000549678 LBX1P52954 281 aa9.03□□□□□ -0.96
PTCH1-219ENST00000549678 HUNKP57058 714 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms