RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SPTLC2O15270 562 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 TOP1P11387 765 aaKnown RBP18.14■□□□□ 0.49
CUX1-211ENST00000546411 DDB1Q16531 1140 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 CBFA2T2O43439 604 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 LARGE1O95461 756 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 UQCRFS1P1P0C7P4 283 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 PUS3Q9BZE2 481 aaKnown RBP18.14■□□□□ 0.49
CUX1-211ENST00000546411 RNF41Q9H4P4 317 aaPredicted RBP18.14■□□□□ 0.49
CUX1-211ENST00000546411 POLR1AO95602 1720 aaPredicted RBP18.14■□□□□ 0.49
CUX1-211ENST00000546411 KDRP35968 1356 aa18.14■□□□□ 0.49
CUX1-211ENST00000546411 RBM5P52756 815 aaKnown RBP eCLIP18.13■□□□□ 0.495e-8■■■□□ 16.8
CUX1-211ENST00000546411 CCDC152Q4G0S7 254 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 SOGA3Q5TF21 947 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 DACH1Q9UI36 760 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 TSPY2A6NKD2 308 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 GPAA1O43292 621 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 ATP5JP18859 108 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 NLRP5P59047 1200 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 VAT1LQ9HCJ6 419 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 MAGEC2Q9UBF1 373 aaPredicted RBP18.13■□□□□ 0.49
CUX1-211ENST00000546411 MTMR6Q9Y217 621 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 URI1O94763 535 aaPredicted RBP18.13■□□□□ 0.49
CUX1-211ENST00000546411 LIG1P18858 919 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 ZSCAN29Q8IWY8 852 aaPredicted RBP18.13■□□□□ 0.49
CUX1-211ENST00000546411 LEO1Q8WVC0 666 aaPredicted RBP18.13■□□□□ 0.49
CUX1-211ENST00000546411 PTPRMP28827 1452 aa18.13■□□□□ 0.49
CUX1-211ENST00000546411 SASH1O94885 1247 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 CCDC102BQ68D86 513 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 CATIPQ7Z7H3 387 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 SKILP12757 684 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 AFMP43652 599 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 KLHL34Q8N239 644 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.12■□□□□ 0.49
CUX1-211ENST00000546411 STX8Q9UNK0 236 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 V9GYY5 206 aaPredicted RBP18.12■□□□□ 0.49
CUX1-211ENST00000546411 MBD4O95243 580 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 SLFNL1Q499Z3 407 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 ARHGEF40Q8TER5 1519 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 OFD1O75665 1012 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 PI4K2BQ8TCG2 481 aa18.12■□□□□ 0.49
CUX1-211ENST00000546411 SPDYE4A6NLX3 237 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 KIF18AQ8NI77 898 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 SMARCE1Q969G3 411 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 ZSWIM6Q9HCJ5 1215 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 RTN1Q16799 776 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 KCNG4Q8TDN1 519 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 ERBB3P21860 1342 aa18.11■□□□□ 0.49
CUX1-211ENST00000546411 LAMC1P11047 1609 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 NBPF5PQ86XG9 351 aaPredicted RBP18.1■□□□□ 0.49
CUX1-211ENST00000546411 CAGE1Q8TC20 777 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 PHKBQ93100 1093 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 CEP131Q9UPN4 1083 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 EPHA10Q5JZY3 1008 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 TTC6Q86TZ1 520 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 ANKRD18AQ8IVF6 992 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 PRDM1O75626 825 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 GPS2Q13227 327 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 TM6SF1Q9BZW5 370 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 HELLSQ9NRZ9 838 aa18.1■□□□□ 0.49
CUX1-211ENST00000546411 ZNF219Q9P2Y4 722 aaPredicted RBP18.09■□□□□ 0.49
CUX1-211ENST00000546411 SETBP1Q9Y6X0 1596 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 KRT18P05783 430 aaKnown RBP18.09■□□□□ 0.49
CUX1-211ENST00000546411 SKIDA1Q1XH10 827 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 ZNF444Q8N0Y2 327 aaPredicted RBP18.09■□□□□ 0.49
CUX1-211ENST00000546411 UTP14AQ9BVJ6 771 aaKnown RBP18.09■□□□□ 0.49
CUX1-211ENST00000546411 ARMT1Q9H993 441 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 SLAIN2Q9P270 581 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 INO80Q9ULG1 1556 aaPredicted RBP18.09■□□□□ 0.49
CUX1-211ENST00000546411 E7EWF7 191 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 EPS15P42566 896 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 SPECC1Q5M775 1068 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 UBXN4Q92575 508 aa18.09■□□□□ 0.49
CUX1-211ENST00000546411 C6orf229H3BNL8 230 aa18.08■□□□□ 0.49
CUX1-211ENST00000546411 MAP4K1Q92918 833 aa18.08■□□□□ 0.49
CUX1-211ENST00000546411 ZBTB9Q96C00 473 aa18.08■□□□□ 0.49
CUX1-211ENST00000546411 TANGO6Q9C0B7 1094 aa18.08■□□□□ 0.49
CUX1-211ENST00000546411 ASAP1Q9ULH1 1129 aa18.08■□□□□ 0.49
CUX1-211ENST00000546411 PI16Q6UXB8 463 aa18.08■□□□□ 0.48
CUX1-211ENST00000546411 TSC1Q92574 1164 aa18.08■□□□□ 0.48
CUX1-211ENST00000546411 APPBP2Q92624 585 aa18.08■□□□□ 0.48
CUX1-211ENST00000546411 KIDINS220Q9ULH0 1771 aa18.08■□□□□ 0.48
CUX1-211ENST00000546411 CPSF1Q10570 1443 aaKnown RBP18.07■□□□□ 0.48
CUX1-211ENST00000546411 TMEM94Q12767 1356 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 MPHOSPH10O00566 681 aaKnown RBP18.07■□□□□ 0.48
CUX1-211ENST00000546411 CCP110O43303 1012 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 TNNT3P45378 269 aaPredicted RBP18.07■□□□□ 0.48
CUX1-211ENST00000546411 NAA16Q6N069 864 aaPredicted RBP18.07■□□□□ 0.48
CUX1-211ENST00000546411 TCEAL9Q9UHQ7 104 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 ADORA1P30542 326 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 UBASH3AP57075 661 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 CCDC70Q6NSX1 233 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 LMTK2Q8IWU2 1503 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 CYP21A2P08686 494 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 STIM1Q13586 685 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 ARHGAP29Q52LW3 1261 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 ZSWIM4Q9H7M6 989 aa18.07■□□□□ 0.48
CUX1-211ENST00000546411 A0A087WWV3 80 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 IGKV5-2P06315 115 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 CUL4AQ13619 759 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 CBX8Q9HC52 389 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms