RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PCDHGC3Q9UN70 934 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 AFDNP55196 1824 aaKnown RBP7.64□□□□□ -1.19
SYNE1-239ENST00000545694 FDX1P10109 184 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 BECN1Q14457 450 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 CASC1Q6TDU7 716 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 BARGINQ6ZT62 677 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 ERICH6Q7L0X2 663 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 RETREG3Q86VR2 466 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 ERC1Q8IUD2 1116 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 NUDT12Q9BQG2 462 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 METTL22Q9BUU2 404 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-239ENST00000545694 LRRCC1Q9C099 1032 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 TMOD3Q9NYL9 352 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 C9orf78Q9NZ63 289 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-239ENST00000545694 MAP3K2Q9Y2U5 619 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 ARFGEF2Q9Y6D5 1785 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 GLI3P10071 1580 aa7.63□□□□□ -1.19
SYNE1-239ENST00000545694 KCPQ6ZWJ8 1503 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 JCADQ9P266 1359 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 TOGARAM1Q9Y4F4 1720 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 NDUFV2P19404 249 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 SSTR3P32745 418 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-239ENST00000545694 SLC39A6Q13433 755 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.62□□□□□ -1.19
SYNE1-239ENST00000545694 RIC3Q7Z5B4 369 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 PLEKHM2Q8IWE5 1019 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 PLBD2Q8NHP8 589 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 KIF1BPQ96EK5 621 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 TRIM47Q96LD4 638 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 SENP2Q9HC62 589 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 NOP58Q9Y2X3 529 aaKnown RBP7.62□□□□□ -1.19
SYNE1-239ENST00000545694 LRRFIP2Q9Y608 721 aaKnown RBP7.62□□□□□ -1.19
SYNE1-239ENST00000545694 AK9Q5TCS8 1911 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 SLIT2O94813 1529 aa7.62□□□□□ -1.19
SYNE1-239ENST00000545694 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.61□□□□□ -1.19
SYNE1-239ENST00000545694 ZNF831Q5JPB2 1677 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 SPATA31A1Q5TZJ5 1347 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 SPATA31A6Q5VVP1 1343 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 CICQ96RK0 1608 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-239ENST00000545694 GRM8O00222 908 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 EPB41L2O43491 1005 aaKnown RBP7.61□□□□□ -1.19
SYNE1-239ENST00000545694 CDC45O75419 566 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 STARD3NLO95772 234 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 TTC22Q5TAA0 569 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 LRP10Q7Z4F1 713 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 SKAP1Q86WV1 359 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 EHBP1Q8NDI1 1231 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 DDX54Q8TDD1 881 aaKnown RBP7.61□□□□□ -1.19
SYNE1-239ENST00000545694 SPIRE2Q8WWL2 714 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 TBC1D32Q96NH3 1257 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 STAP2Q9UGK3 403 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 TUBGCP6Q96RT7 1819 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 NUP188Q5SRE5 1749 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 BCL9O00512 1426 aa7.61□□□□□ -1.19
SYNE1-239ENST00000545694 SPATA31A5Q5VU36 1347 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 SPATA31A7Q8IWB4 1347 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 NEURL1BA8MQ27 555 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 TERTO14746 1132 aaKnown RBP7.6□□□□□ -1.19
SYNE1-239ENST00000545694 SIAH2O43255 324 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 SRGAP3O43295 1099 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 TRIM28Q13263 835 aaKnown RBP7.6□□□□□ -1.19
SYNE1-239ENST00000545694 LCE2CQ5TA81 110 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 COPS6Q7L5N1 327 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 PPP1R42Q7Z4L9 355 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 XAGE3Q8WTP9 111 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 USP16Q9Y5T5 823 aa7.6□□□□□ -1.19
SYNE1-239ENST00000545694 PNMA6EA0A0J9YXQ4 647 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 UBAP1LF5GYI3 381 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 RBM25P49756 843 aaKnown RBP7.59□□□□□ -1.19
SYNE1-239ENST00000545694 PDE1AP54750 535 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 SH3BP2P78314 561 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 GCKRQ14397 625 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 DDB1Q16531 1140 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 PROSER3Q2NL68 480 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 HSP90AB3PQ58FF7 597 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 NPM2Q86SE8 214 aaKnown RBP7.59□□□□□ -1.19
SYNE1-239ENST00000545694 TICAM2Q86XR7 235 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 CCDC191Q8NCU4 936 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 C22orf23Q9BZE7 217 aa7.59□□□□□ -1.19
SYNE1-239ENST00000545694 TTC41PQ6P2S7 1318 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 USP42Q9H9J4 1324 aaKnown RBP7.58□□□□□ -1.2
SYNE1-239ENST00000545694 PRAMEF22A3QJZ6 481 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 MOXD2PA6NHM9 499 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 ERC2O15083 957 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 SURF6O75683 361 aaKnown RBP7.58□□□□□ -1.2
SYNE1-239ENST00000545694 REC8O95072 547 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 IGKV5-2P06315 115 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 NBPF7P0C2Y1 421 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-239ENST00000545694 CCNYL3P0C7X3 344 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 MYL6BP14649 208 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 MX1P20591 662 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 HMGB2P26583 209 aaKnown RBP7.58□□□□□ -1.2
SYNE1-239ENST00000545694 AIMP1Q12904 312 aaKnown RBP7.58□□□□□ -1.2
SYNE1-239ENST00000545694 LINC01559Q495D7 138 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 UNC5CLQ8IV45 518 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 PIGBQ92521 554 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 SMARCC1Q92922 1105 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-239ENST00000545694 GPATCH3Q96I76 525 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 WASF2Q9Y6W5 498 aa7.58□□□□□ -1.2
SYNE1-239ENST00000545694 DOT1LQ8TEK3 1739 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms