RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 MAP3K11Q16584 847 aa14.81□□□□□ -0.04
SFSWAP-208ENST00000539506 TPD52L1Q16890 204 aaPredicted RBP14.81□□□□□ -0.04
SFSWAP-208ENST00000539506 NAP1L2Q9ULW6 460 aaPredicted RBP14.81□□□□□ -0.04
SFSWAP-208ENST00000539506 PLEKHG2Q9H7P9 1386 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 PARP4Q9UKK3 1724 aaKnown RBP14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 USP27XA6NNY8 438 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 LETM1O95202 739 aaPredicted RBP14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 SCRN1Q12765 414 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 CCDC144BQ3MJ40 725 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 FILIP1Q7Z7B0 1213 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 CCDC144CPQ8IYA2 1237 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 PRDM11Q9NQV5 511 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 PAG1Q9NWQ8 432 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 PCDH11XQ9BZA7 1347 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 PCDH11YQ9BZA8 1340 aa14.8□□□□□ -0.04
SFSWAP-208ENST00000539506 UBR2Q8IWV8 1755 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 KRT85P78386 507 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 BRF1Q92994 677 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 U3KPZ7 1027 aaPredicted RBP14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 RFX7Q2KHR2 1363 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 NCBP1Q09161 790 aaKnown RBP14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 SPATA32Q96LK8 384 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 SH3TC1Q8TE82 1336 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 ERVV-2B6SEH9 535 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 KRT32Q14532 448 aa14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 CACTINQ8WUQ7 758 aaKnown RBP14.79□□□□□ -0.04
SFSWAP-208ENST00000539506 CTDNEP1O95476 244 aa14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 PDCP20941 246 aa14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 GTF2F1P35269 517 aaKnown RBP eCLIP14.78□□□□□ -0.049e-11■■■■■ 43.8
SFSWAP-208ENST00000539506 NKX1-1Q15270 411 aaPredicted RBP14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 FAM200AQ8TCP9 573 aa14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 PGBD1Q96JS3 809 aa14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 ELP1O95163 1332 aa14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 PALLDQ8WX93 1383 aa14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 COL5A2P05997 1499 aaPredicted RBP14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 LEO1Q8WVC0 666 aaPredicted RBP14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 CGNQ9P2M7 1197 aaKnown RBP14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 XIRP1Q702N8 1843 aaKnown RBP14.78□□□□□ -0.04
SFSWAP-208ENST00000539506 A0A1B0GUL7 405 aa14.77□□□□□ -0.04
SFSWAP-208ENST00000539506 GOLGA6L6A8MZA4 724 aa14.77□□□□□ -0.04
SFSWAP-208ENST00000539506 EYA2O00167 538 aa14.77□□□□□ -0.04
SFSWAP-208ENST00000539506 GUCY1B3Q02153 619 aa14.77□□□□□ -0.04
SFSWAP-208ENST00000539506 IL15P40933 162 aaPredicted RBP14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 ZNF165P49910 485 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 RESTQ13127 1097 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 ZMYM1Q5SVZ6 1142 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 CCDC191Q8NCU4 936 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 CCDC85AQ96PX6 553 aaPredicted RBP14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 ST7Q9NRC1 585 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 CLIP2Q9UDT6 1046 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 FOXP2O15409 715 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 HSPD1P10809 573 aaKnown RBP14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 TTLL5Q6EMB2 1281 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 CHST3Q7LGC8 479 aa14.77□□□□□ -0.05
SFSWAP-208ENST00000539506 MAST3O60307 1309 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 M0R2C6 588 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 ADORA1P30542 326 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 EXOSC10Q01780 885 aaKnown RBP14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 APOBRQ0VD83 1088 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 ZSCAN25Q6NSZ9 544 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 SYNE4Q8N205 404 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 GPR108Q9NPR9 543 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 LAMA4Q16363 1823 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 SHANK3Q9BYB0 1731 aa14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 HSP90B1P14625 803 aaKnown RBP14.76□□□□□ -0.05
SFSWAP-208ENST00000539506 PAPPAQ13219 1627 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 ERICH4A6NGS2 130 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 IL2RBP14784 551 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 SMARCC2Q8TAQ2 1214 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 OSBP2Q969R2 916 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 TRERF1Q96PN7 1200 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 STRN4Q9NRL3 753 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 HELLSQ9NRZ9 838 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 TNS2Q63HR2 1409 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 ADD1P35611 737 aaKnown RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 SCARF1Q14162 830 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 DHX32Q7L7V1 743 aaKnown RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 NSUN7Q8NE18 718 aaKnown RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 ISCA1Q9BUE6 129 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 NCOA5Q9HCD5 579 aaKnown RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 E7EWF7 191 aa14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 IFIT1P09914 478 aaKnown RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 GPHNQ9NQX3 736 aaPredicted RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 ZNF330Q9Y3S2 320 aaPredicted RBP14.75□□□□□ -0.05
SFSWAP-208ENST00000539506 PFKFB2O60825 505 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 ZNF75DP51815 510 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 CCT2P78371 535 aaKnown RBP14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 PTPN21Q16825 1174 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 FAM89AQ96GI7 184 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 DSCC1Q9BVC3 393 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 SCAND2PQ9GZW5 306 aaPredicted RBP14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 CCDC112Q8NEF3 446 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 AGXT2Q9BYV1 514 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 ASAP1Q9ULH1 1129 aa14.74□□□□□ -0.05
SFSWAP-208ENST00000539506 SOS2Q07890 1332 aaPredicted RBP14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 RNF113AO15541 343 aaKnown RBP14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 PI16Q6UXB8 463 aa14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 C11orf57Q6ZUT1 292 aaPredicted RBP14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 CARD10Q9BWT7 1032 aa14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 CIAO1O76071 339 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms