RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 CCDC34Q96HJ3 373 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 ZNF396Q96N95 335 aaPredicted RBP17.37■□□□□ 0.37
SYNE1-236ENST00000537750 PFKFB2O60825 505 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 TADA3O75528 432 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 OTUD7BQ6GQQ9 843 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 ZBTB9Q96C00 473 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 CHMP4AQ9BY43 222 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 TMX1Q9H3N1 280 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 PRAMEF22A3QJZ6 481 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 TPM4P67936 248 aa17.36■□□□□ 0.37
SYNE1-236ENST00000537750 JCADQ9P266 1359 aa17.35■□□□□ 0.37
SYNE1-236ENST00000537750 OAS2P29728 719 aaKnown RBP17.35■□□□□ 0.37
SYNE1-236ENST00000537750 TBC1D8O95759 1140 aa17.35■□□□□ 0.37
SYNE1-236ENST00000537750 EVCP57679 992 aa17.35■□□□□ 0.37
SYNE1-236ENST00000537750 TEFQ10587 303 aa17.35■□□□□ 0.37
SYNE1-236ENST00000537750 UTP14AQ9BVJ6 771 aaKnown RBP17.35■□□□□ 0.37
SYNE1-236ENST00000537750 AIMP1Q12904 312 aaKnown RBP17.34■□□□□ 0.37
SYNE1-236ENST00000537750 NCAPHQ15003 741 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 CHST3Q7LGC8 479 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 A0A0G2JLW4 131 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 GRM8O00222 908 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 FANCCQ00597 558 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 KSR2Q6VAB6 950 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 DPF2Q92785 391 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.34■□□□□ 0.37
SYNE1-236ENST00000537750 DBF4Q9UBU7 674 aaPredicted RBP17.34■□□□□ 0.37
SYNE1-236ENST00000537750 CCDC9Q9Y3X0 531 aaKnown RBP17.34■□□□□ 0.37
SYNE1-236ENST00000537750 CLIC4Q9Y696 253 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 NRDCO43847 1150 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 POLR3DP05423 398 aaPredicted RBP17.34■□□□□ 0.37
SYNE1-236ENST00000537750 LLPHQ9BRT6 129 aaKnown RBP17.34■□□□□ 0.37
SYNE1-236ENST00000537750 PARP3Q9Y6F1 533 aa17.34■□□□□ 0.37
SYNE1-236ENST00000537750 PHLPP2Q6ZVD8 1323 aa17.33■□□□□ 0.37
SYNE1-236ENST00000537750 BTBD11A6QL63 1104 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 HDGFP51858 240 aaKnown RBP17.33■□□□□ 0.36
SYNE1-236ENST00000537750 SF3A1Q15459 793 aaKnown RBP17.33■□□□□ 0.36
SYNE1-236ENST00000537750 ADALQ6DHV7 355 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 NEDD4P46934 1319 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 KCNJ6P48051 423 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 SMC1AQ14683 1233 aaKnown RBP17.33■□□□□ 0.36
SYNE1-236ENST00000537750 REXO1L1PQ8IX06 675 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 UBXN6Q9BZV1 441 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 LCMT1Q9UIC8 334 aa17.33■□□□□ 0.36
SYNE1-236ENST00000537750 GNL2Q13823 731 aaKnown RBP17.32■□□□□ 0.36
SYNE1-236ENST00000537750 MPRIPQ6WCQ1 1025 aa17.32■□□□□ 0.36
SYNE1-236ENST00000537750 TXLNBQ8N3L3 684 aa17.32■□□□□ 0.36
SYNE1-236ENST00000537750 U3KPZ7 1027 aaPredicted RBP17.32■□□□□ 0.36
SYNE1-236ENST00000537750 ZNF609O15014 1411 aa17.32■□□□□ 0.36
SYNE1-236ENST00000537750 SLC3A2P08195 630 aaKnown RBP17.32■□□□□ 0.36
SYNE1-236ENST00000537750 CC2D1AQ6P1N0 951 aaPredicted RBP17.32■□□□□ 0.36
SYNE1-236ENST00000537750 DBNLQ9UJU6 430 aaKnown RBP17.32■□□□□ 0.36
SYNE1-236ENST00000537750 CEMIPQ8WUJ3 1361 aa17.32■□□□□ 0.36
SYNE1-236ENST00000537750 EFCAB8A8MWE9 144 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 TRIM66O15016 1216 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 STK38Q15208 465 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 LRRFIP1Q32MZ4 808 aaKnown RBP17.31■□□□□ 0.36
SYNE1-236ENST00000537750 DDX46Q7L014 1031 aaKnown RBP17.31■□□□□ 0.36
SYNE1-236ENST00000537750 ZFP91Q96JP5 570 aaPredicted RBP17.31■□□□□ 0.36
SYNE1-236ENST00000537750 NWD1Q149M9 1564 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 HOXB7P09629 217 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 ZSCAN26Q16670 478 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 DHX32Q7L7V1 743 aaKnown RBP17.31■□□□□ 0.36
SYNE1-236ENST00000537750 HSD3B7Q9H2F3 369 aa17.31■□□□□ 0.36
SYNE1-236ENST00000537750 NLRP12P59046 1061 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 CERS3Q8IU89 383 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 LINC00301Q8NCQ3 95 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 GJB4Q9NTQ9 266 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 EPHA10Q5JZY3 1008 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 CCDC158Q5M9N0 1113 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 C10orf67Q8IYJ2 551 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 SLC26A8Q96RN1 970 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 WDR24Q96S15 920 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 BPIFA3Q9BQP9 254 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 TSPYL1Q9H0U9 437 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 RTEL1Q9NZ71 1219 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 TMEM232C9JQI7 657 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 ZNF202O95125 648 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 TUBB4AP04350 444 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 FDPSP14324 419 aaKnown RBP17.3■□□□□ 0.36
SYNE1-236ENST00000537750 ATL3Q6DD88 541 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 CCDC191Q8NCU4 936 aa17.3■□□□□ 0.36
SYNE1-236ENST00000537750 UBASH3AP57075 661 aa17.29■□□□□ 0.36
SYNE1-236ENST00000537750 MCMDC2Q4G0Z9 681 aa17.29■□□□□ 0.36
SYNE1-236ENST00000537750 LINS1Q8NG48 757 aa17.29■□□□□ 0.36
SYNE1-236ENST00000537750 VWA3AA6NCI4 1184 aa17.29■□□□□ 0.36
SYNE1-236ENST00000537750 SERPINC1P01008 464 aa17.29■□□□□ 0.36
SYNE1-236ENST00000537750 MUM1L1Q5H9M0 696 aa17.29■□□□□ 0.36
SYNE1-236ENST00000537750 SRRTQ9BXP5 876 aaKnown RBP17.29■□□□□ 0.36
SYNE1-236ENST00000537750 GPHNQ9NQX3 736 aaPredicted RBP17.29■□□□□ 0.36
SYNE1-236ENST00000537750 SALL1Q9NSC2 1324 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 PDIA3P30101 505 aaKnown RBP17.28■□□□□ 0.36
SYNE1-236ENST00000537750 CFAP100Q494V2 611 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 HSP90AA4PQ58FG1 418 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 RSPH14Q9UHP6 348 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 TOPAZ1Q8N9V7 1692 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 A0A1W2PQ27 194 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 A0A1W2PQ64 194 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 A0A1W2PQD8 194 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 TFCP2Q12800 502 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 NBPF6Q5VWK0 638 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms