RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	USP5	P45974	858 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	IREB2	P48200	963 aa	Known RBP	4.61	□□□□□ -1.67
CD44-216	ENST00000525293	EHHADH	Q08426	723 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	RSPO4	Q2I0M5	234 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-216	ENST00000525293	NKAPL	Q5M9Q1	402 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	GLYCTK	Q8IVS8	523 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	CACTIN-AS1	Q8N1I8	211 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	WFDC12	Q8WWY7	111 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	PMEPA1	Q969W9	287 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	MUC3B	Q9H195	1237 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	TUT1	Q9H6E5	874 aa	Known RBP	4.61	□□□□□ -1.67
CD44-216	ENST00000525293	SH2B1	Q9NRF2	756 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-216	ENST00000525293	EGFL7	Q9UHF1	273 aa		4.61	□□□□□ -1.67
CD44-216	ENST00000525293	FOXD3	Q9UJU5	478 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-216	ENST00000525293	PHACTR2	O75167	634 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	ALX3	O95076	343 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	NOS3	P29474	1203 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	PDE4C	Q08493	712 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	ECM1	Q16610	540 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	MAP4K3	Q8IVH8	894 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293		Q8N3U1	123 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	GALNT11	Q8NCW6	608 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	TP53INP1	Q96A56	240 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	DZANK1	Q9NVP4	752 aa		4.6	□□□□□ -1.67
CD44-216	ENST00000525293	FAM177B	A6PVY3	158 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	NFKBIE	O00221	500 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	PDE2A	O00408	941 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-216	ENST00000525293	PTPRA	P18433	802 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	EPHA1	P21709	976 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	ITGB7	P26010	798 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	TXNDC2	Q86VQ3	553 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	GJD3	Q8N144	294 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	SNX29	Q8TEQ0	813 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	HHIP	Q96QV1	700 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	OSMR	Q99650	979 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	CARD10	Q9BWT7	1032 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	ADAM19	Q9H013	955 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	MRPL18	Q9H0U6	180 aa	Known RBP	4.59	□□□□□ -1.67
CD44-216	ENST00000525293	SRA1	Q9HD15	236 aa	Known RBP	4.59	□□□□□ -1.67
CD44-216	ENST00000525293	BRPF3	Q9ULD4	1205 aa		4.59	□□□□□ -1.67
CD44-216	ENST00000525293	FSCN2	O14926	492 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	DYRK3	O43781	588 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	CD68	P34810	354 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-216	ENST00000525293	FAM117B	Q6P1L5	589 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	TMEM130	Q8N3G9	435 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	CCER1	Q8TC90	406 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-216	ENST00000525293	MEGF10	Q96KG7	1140 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	ZKSCAN3	Q9BRR0	538 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	SSBP4	Q9BWG4	385 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-216	ENST00000525293	AKTIP	Q9H8T0	292 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	ZFYVE28	Q9HCC9	887 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293	AMOTL2	Q9Y2J4	779 aa		4.58	□□□□□ -1.68
CD44-216	ENST00000525293		F8W735	103 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-216	ENST00000525293	POLR3D	P05423	398 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-216	ENST00000525293	EDN3	P14138	238 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	CABP4	P57796	275 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	ARHGAP4	P98171	946 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-216	ENST00000525293	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-216	ENST00000525293	KRTAP1-3	Q8IUG1	177 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	AGGF1	Q8N302	714 aa	eCLIP	4.57	□□□□□ -1.68
CD44-216	ENST00000525293	TMEM102	Q8N9M5	508 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-216	ENST00000525293	DCAF11	Q8TEB1	546 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	NXPE3	Q969Y0	559 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	KLHDC7B	Q96G42	594 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	SEC31B	Q9NQW1	1179 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	LATS2	Q9NRM7	1088 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293	KCNK4	Q9NYG8	393 aa		4.57	□□□□□ -1.68
CD44-216	ENST00000525293		H3BRJ5	948 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	TM4SF5	O14894	197 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	DDX3Y	O15523	660 aa	Known RBP	4.56	□□□□□ -1.68
CD44-216	ENST00000525293	NDUFB5	O43674	189 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	WISP1	O95388	367 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	H2AFB1	P0C5Y9	115 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	H2AFB2	P0C5Z0	115 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	PEAR1	Q5VY43	1037 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-216	ENST00000525293	KLHL23	Q8NBE8	558 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	ASAP3	Q8TDY4	903 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	SLC7A3	Q8WY07	619 aa		4.56	□□□□□ -1.68
CD44-216	ENST00000525293	ADAM11	O75078	769 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	GLB1	P16278	677 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	DUOXA2	Q1HG44	320 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	PRSS36	Q5K4E3	855 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	HGSNAT	Q68CP4	663 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	ACAD11	Q709F0	780 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	4.55	□□□□□ -1.68
CD44-216	ENST00000525293	DZIP1L	Q8IYY4	767 aa	Known RBP	4.55	□□□□□ -1.68
CD44-216	ENST00000525293	TMC1	Q8TDI8	760 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	BSND	Q8WZ55	320 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	SOX13	Q9UN79	622 aa		4.55	□□□□□ -1.68
CD44-216	ENST00000525293	SOWAHD	A6NJG2	315 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	METTL12	A8MUP2	240 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	SOX1	O00570	391 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-216	ENST00000525293	BRD1	O95696	1058 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	NEFL	P07196	543 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	ARL4D	P49703	201 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	NLRP12	P59046	1061 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	PIP4K2B	P78356	416 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	PDE3B	Q13370	1112 aa		4.54	□□□□□ -1.68
CD44-216	ENST00000525293	ORC1	Q13415	861 aa		4.54	□□□□□ -1.68

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