RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 HIF1AQ16665 826 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 C1orf53Q5VUE5 145 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 LARP1BQ659C4 914 aaKnown RBP7.15□□□□□ -1.26
USP47-204ENST00000525078 PDE12Q6L8Q7 609 aaKnown RBP7.15□□□□□ -1.26
USP47-204ENST00000525078 GALNT12Q8IXK2 581 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 RAVER1Q8IY67 606 aaKnown RBP7.15□□□□□ -1.26
USP47-204ENST00000525078 GOLM1Q8NBJ4 401 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 CHAC2Q8WUX2 184 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 EVI5LQ96CN4 794 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 EHD4Q9H223 541 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 ELP3Q9H9T3 547 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 PFDN2Q9UHV9 154 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 TRAK1Q9UPV9 953 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 BCS1LQ9Y276 419 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 AKAP2Q9Y2D5 859 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 KDM2BQ8NHM5 1336 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 POTECB2RU33 542 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 CAND2O75155 1236 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 PF4P02776 101 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 KRT18P05783 430 aaKnown RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 GTF2E1P29083 439 aaPredicted RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 GGCXP38435 758 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 FCGRTP55899 365 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 HDAC1Q13547 482 aaPredicted RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 FXNQ16595 210 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 C21orf62-AS1Q17RA5 79 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 DALRD3Q5D0E6 543 aaKnown RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 PPP1R26Q5T8A7 1209 aaPredicted RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 PPP4R4Q6NUP7 873 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 CCDC116Q8IYX3 515 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 CMTR1Q8N1G2 835 aaKnown RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 RHPN1Q8TCX5 695 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 FERD3LQ96RJ6 166 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 NIFKQ9BYG3 293 aaKnown RBP7.14□□□□□ -1.27
USP47-204ENST00000525078 TERF2IPQ9NYB0 399 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 PLAAQ9Y263 795 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 USP20Q9Y2K6 914 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 CD2APQ9Y5K6 639 aa7.14□□□□□ -1.27
USP47-204ENST00000525078 TGFBR3LH3BV60 316 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 GREM1O60565 184 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 PPFIA4O75335 1185 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 FBXO24O75426 580 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 MCM4P33991 863 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 ADD1P35611 737 aaKnown RBP7.13□□□□□ -1.27
USP47-204ENST00000525078 GNALP38405 381 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 IDH3AP50213 366 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 C4orf46Q504U0 113 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 SEZ6Q53EL9 994 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 PRPF40BQ6NWY9 871 aaKnown RBP7.13□□□□□ -1.27
USP47-204ENST00000525078 SYNPOQ8N3V7 929 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 FAM169BQ8N8A8 192 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 PHC3Q8NDX5 983 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 RHOVQ96L33 236 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 MPHOSPH6Q99547 160 aaKnown RBP7.13□□□□□ -1.27
USP47-204ENST00000525078 TMEM63CQ9P1W3 806 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 MCM8Q9UJA3 840 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 TLR6Q9Y2C9 796 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 PTCH2Q9Y6C5 1203 aa7.13□□□□□ -1.27
USP47-204ENST00000525078 ALG1L2C9J202 215 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 EREGO14944 169 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 ALDH1L1O75891 902 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 S1PR4O95977 384 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 MYCLP1P12525 358 aaPredicted RBP7.12□□□□□ -1.27
USP47-204ENST00000525078 EPHB1P54762 984 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 MAP3K10Q02779 954 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 CENPCQ03188 943 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 CAMK2GQ13555 558 aaPredicted RBP7.12□□□□□ -1.27
USP47-204ENST00000525078 PPP2R5AQ15172 486 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 TMEM214Q6NUQ4 689 aaKnown RBP7.12□□□□□ -1.27
USP47-204ENST00000525078 SV2BQ7L1I2 683 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 TEX2Q8IWB9 1127 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 EHBP1Q8NDI1 1231 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 C3orf58Q8NDZ4 430 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 NLRP3Q96P20 1036 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 OXCT2Q9BYC2 517 aaPredicted RBP7.12□□□□□ -1.27
USP47-204ENST00000525078 KCNQ5Q9NR82 932 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 PGPEP1Q9NXJ5 209 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 PPM1HQ9ULR3 514 aa7.12□□□□□ -1.27
USP47-204ENST00000525078 RNF223E7ERA6 249 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 TSPAN6O43657 245 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 TXLNAP40222 546 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 SLC19A1P41440 591 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 CRKP46108 304 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 LIG3P49916 1009 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 ARSDP51689 593 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 NFKB2Q00653 900 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 SSRP1Q08945 709 aaKnown RBP7.11□□□□□ -1.27
USP47-204ENST00000525078 GRIN2CQ14957 1233 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 BRD3Q15059 726 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 ZFYVE27Q5T4F4 411 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 NBPF10Q6P3W6 841 aaKnown RBP7.11□□□□□ -1.27
USP47-204ENST00000525078 DTHD1Q6ZMT9 781 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 DDX42Q86XP3 938 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP47-204ENST00000525078 SLITRK4Q8IW52 837 aa7.11□□□□□ -1.27
USP47-204ENST00000525078 RTCBQ9Y3I0 505 aaKnown RBP7.11□□□□□ -1.27
USP47-204ENST00000525078 MEN1O00255 615 aa7.1□□□□□ -1.27
USP47-204ENST00000525078 TLR3O15455 904 aaKnown RBP7.1□□□□□ -1.27
USP47-204ENST00000525078 DIAPH1O60610 1272 aaKnown RBP7.1□□□□□ -1.27
USP47-204ENST00000525078 WDHD1O75717 1129 aaPredicted RBP7.1□□□□□ -1.27
USP47-204ENST00000525078 DDAH1O94760 285 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms