RNA–Protein interactions for RNA: ENST00000521944.1

TRAPPC9-212, Transcript of trafficking protein particle complex 9, humanhuman

TSL 3

Gene TRAPPC9, Length 492 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-212ENST00000521944 TRIM17Q9Y577 477 aa11.96□□□□□ -0.49
TRAPPC9-212ENST00000521944 TAF1P21675 1872 aa11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 RPS12P25398 132 aaKnown RBP11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 FOXK1P85037 733 aa11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 ANGEL2Q5VTE6 544 aaKnown RBP11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 PRAMEF18Q5VWM3 479 aa11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 ZBTB3Q9H5J0 574 aa11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 RBM27Q9P2N5 1060 aaKnown RBP11.95□□□□□ -0.5
TRAPPC9-212ENST00000521944 SCN9AQ15858 1988 aa11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 SCARF1Q14162 830 aa11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 MCM10Q7L590 875 aa11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 ZNF710Q8N1W2 664 aa11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 TMX4Q9H1E5 349 aaPredicted RBP11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 POLLQ9UGP5 575 aa11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 COL3A1P02461 1466 aaPredicted RBP11.94□□□□□ -0.5
TRAPPC9-212ENST00000521944 VIL1P09327 827 aaKnown RBP11.93□□□□□ -0.5
TRAPPC9-212ENST00000521944 ZNF280AP59817 542 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-212ENST00000521944 FAM163AQ96GL9 167 aaPredicted RBP11.93□□□□□ -0.5
TRAPPC9-212ENST00000521944 PRO3102Q9H379 93 aa11.93□□□□□ -0.5
TRAPPC9-212ENST00000521944 MIS18AQ9NYP9 233 aa11.93□□□□□ -0.5
TRAPPC9-212ENST00000521944 PTPN22Q9Y2R2 807 aa11.93□□□□□ -0.5
TRAPPC9-212ENST00000521944 HCLS1P14317 486 aaPredicted RBP11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 DCTN1Q14203 1278 aa11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 WASHC4Q2M389 1173 aa11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 GIGYF2Q6Y7W6 1299 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 LARP6Q9BRS8 491 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 ZSWIM6Q9HCJ5 1215 aa11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 RRP7AQ9Y3A4 280 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-212ENST00000521944 COL4A1P02462 1669 aa11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 ECE2O60344 883 aa11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 PTPN12Q05209 780 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 GRAPQ13588 217 aa11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 LRP10Q7Z4F1 713 aa11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 GRAPLQ8TC17 118 aaPredicted RBP11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 DDX27Q96GQ7 796 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 KNSTRNQ9Y448 316 aa11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 LAMB2P55268 1798 aa11.91□□□□□ -0.5
TRAPPC9-212ENST00000521944 U2SURPO15042 1029 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 HOXB3P14651 431 aaPredicted RBP11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 DSG2Q14126 1118 aa11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 PPP1R15BQ5SWA1 713 aa11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 PPP1R42Q7Z4L9 355 aa11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 PLPP6Q8IY26 295 aa11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 ZNF333Q96JL9 665 aa11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 GMLQ99445 158 aa11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 UTP14AQ9BVJ6 771 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-212ENST00000521944 LRRC37AA6NMS7 1700 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 SOX1O00570 391 aaPredicted RBP11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 MYL6BP14649 208 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 GPSM2P81274 684 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 MFSD10Q14728 455 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 KIF6Q6ZMV9 814 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 RSPH6AQ9H0K4 717 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 NSFL1CQ9UNZ2 370 aaKnown RBP11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 ANKRD36CQ5JPF3 1778 aa11.89□□□□□ -0.51
TRAPPC9-212ENST00000521944 PITPNM2Q9BZ72 1349 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 SPTBN5Q9NRC6 3674 aaKnown RBP11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 IGF2BP3O00425 579 aaKnown RBP eCLIP11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 PRKAR2BP31323 418 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 SREBF2Q12772 1141 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 PARP10Q53GL7 1025 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 LDLRAD1Q5T700 205 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 SPRYD7Q5W111 196 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 CD99L2Q8TCZ2 262 aa11.88□□□□□ -0.51
TRAPPC9-212ENST00000521944 NBPF9Q3BBW0 867 aa11.87□□□□□ -0.51
TRAPPC9-212ENST00000521944 DDX46Q7L014 1031 aaKnown RBP11.87□□□□□ -0.51
TRAPPC9-212ENST00000521944 CELF1Q92879 486 aaKnown RBP11.87□□□□□ -0.51
TRAPPC9-212ENST00000521944 ZNF609O15014 1411 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 WTIPA6NIX2 430 aaPredicted RBP11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 C6orf229H3BNL8 230 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 PER1O15534 1290 aaPredicted RBP11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 ST18O60284 1047 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 PDIA6Q15084 440 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 TAF7Q15545 349 aaPredicted RBP11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 NLRP10Q86W26 655 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 TBC1D16Q8TBP0 767 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 THUMPD2Q9BTF0 503 aaKnown RBP11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 MYOZ2Q9NPC6 264 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 FZD1Q9UP38 647 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 LAMB4A4D0S4 1761 aa11.86□□□□□ -0.51
TRAPPC9-212ENST00000521944 TTC28Q96AY4 2481 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 ALDH1A1P00352 501 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 EIF4A1P60842 406 aaKnown RBP11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 RSBN1LQ6PCB5 846 aaPredicted RBP11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 TMC4Q7Z404 712 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 AGBL3Q8NEM8 1001 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 ZNF428Q96B54 188 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 LRCH3Q96II8 777 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 EFCC1Q9HA90 598 aa11.85□□□□□ -0.51
TRAPPC9-212ENST00000521944 USP17L8P0C7I0 530 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 HSPA5P11021 654 aaKnown RBP11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 CRHR2Q13324 411 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 TTLL12Q14166 644 aaPredicted RBP11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 PROSER3Q2NL68 480 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 ERO1AQ96HE7 468 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 PTPN18Q99952 460 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 COL25A1Q9BXS0 654 aaPredicted RBP11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 TSHZ2Q9NRE2 1034 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 WDR70Q9NW82 654 aa11.84□□□□□ -0.51
TRAPPC9-212ENST00000521944 KDM3BQ7LBC6 1761 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms