RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TSG101Q99816 390 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 BMS1Q14692 1282 aaKnown RBP14.53□□□□□ -0.08
USP53-209ENST00000514665 TCERG1LQ5VWI1 586 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 CCDC191Q8NCU4 936 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 ZKSCAN3Q9BRR0 538 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 ABCC2Q92887 1545 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 TNNI3KQ59H18 835 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 SPTY2D1Q68D10 685 aaPredicted RBP14.52□□□□□ -0.08
USP53-209ENST00000514665 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.52□□□□□ -0.08
USP53-209ENST00000514665 FPGT-TNNI3KV9GXZ4 949 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 SBNO1A3KN83 1393 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 GOLGA6L9A6NEM1 432 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 TRIM75PA6NK02 468 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 KCNQ3O43525 872 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 GAS2L3Q86XJ1 694 aa14.52□□□□□ -0.08
USP53-209ENST00000514665 HSPA4P34932 840 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 CCDC40Q4G0X9 1142 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 TMTC2Q8N394 836 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 RPGRQ92834 1020 aaKnown RBP14.52□□□□□ -0.09
USP53-209ENST00000514665 CNNM2Q9H8M5 875 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 NIP7Q9Y221 180 aaKnown RBP eCLIP14.52□□□□□ -0.09
USP53-209ENST00000514665 IRS4O14654 1257 aaPredicted RBP14.52□□□□□ -0.09
USP53-209ENST00000514665 JAK2O60674 1132 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 TRIM21P19474 475 aaKnown RBP14.52□□□□□ -0.09
USP53-209ENST00000514665 MAP9Q49MG5 647 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 NAA16Q6N069 864 aaPredicted RBP14.52□□□□□ -0.09
USP53-209ENST00000514665 ANKRD18AQ8IVF6 992 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 CALML4Q96GE6 196 aa14.52□□□□□ -0.09
USP53-209ENST00000514665 MBD5Q9P267 1494 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 ATP7AQ04656 1500 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 AKR1B10O60218 316 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 SSR1P43307 286 aaKnown RBP14.51□□□□□ -0.09
USP53-209ENST00000514665 IL17REQ8NFR9 667 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 SIRT1Q96EB6 747 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 CRNKL1Q9BZJ0 848 aaKnown RBP14.51□□□□□ -0.09
USP53-209ENST00000514665 JADE2Q9NQC1 790 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 MYO1BO43795 1136 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 PPP1R12BO60237 982 aaPredicted RBP14.51□□□□□ -0.09
USP53-209ENST00000514665 CD2BP2O95400 341 aaKnown RBP14.51□□□□□ -0.09
USP53-209ENST00000514665 BRD1O95696 1058 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 BAG3O95817 575 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 A1BGP04217 495 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 NBPF5PQ86XG9 351 aaPredicted RBP14.51□□□□□ -0.09
USP53-209ENST00000514665 MAGEB6Q8N7X4 407 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 PODXL2Q9NZ53 605 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 TMOD2Q9NZR1 351 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 EYA2O00167 538 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 LDHCP07864 332 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 PLEKHF1Q96S99 279 aa14.51□□□□□ -0.09
USP53-209ENST00000514665 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.51□□□□□ -0.09
USP53-209ENST00000514665 SLU7O95391 586 aaKnown RBP14.5□□□□□ -0.09
USP53-209ENST00000514665 MCM6Q14566 821 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 METTL22Q9BUU2 404 aaPredicted RBP14.5□□□□□ -0.09
USP53-209ENST00000514665 KIF21AQ7Z4S6 1674 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 CDC37L1Q7L3B6 337 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 DZIP3Q86Y13 1208 aaKnown RBP14.5□□□□□ -0.09
USP53-209ENST00000514665 ZNF496Q96IT1 587 aaPredicted RBP14.5□□□□□ -0.09
USP53-209ENST00000514665 FGFR1OPO95684 399 aaKnown RBP14.5□□□□□ -0.09
USP53-209ENST00000514665 IL2RBP14784 551 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 ATP6V1AP38606 617 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 CCDC178Q5BJE1 867 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 C19orf44Q9H6X5 657 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 JAG2Q9Y219 1238 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 GCC2Q8IWJ2 1684 aa14.5□□□□□ -0.09
USP53-209ENST00000514665 B4E1Z4 1266 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 EIF4A1P60842 406 aaKnown RBP14.49□□□□□ -0.09
USP53-209ENST00000514665 SYT10Q6XYQ8 523 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 KRT222Q8N1A0 295 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 DRC1Q96MC2 740 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 STAT6P42226 847 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 LMAN1P49257 510 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 FAM160A1Q05DH4 1040 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 HLTFQ14527 1009 aaKnown RBP eCLIP14.49□□□□□ -0.09
USP53-209ENST00000514665 KARSQ15046 597 aaKnown RBP14.49□□□□□ -0.09
USP53-209ENST00000514665 ABCA5Q8WWZ7 1642 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 HOXB7P09629 217 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 LEO1Q8WVC0 666 aaPredicted RBP14.49□□□□□ -0.09
USP53-209ENST00000514665 AMPD3Q01432 767 aa14.49□□□□□ -0.09
USP53-209ENST00000514665 SMARCC1Q92922 1105 aaPredicted RBP14.49□□□□□ -0.09
USP53-209ENST00000514665 ZFP91Q96JP5 570 aaPredicted RBP14.49□□□□□ -0.09
USP53-209ENST00000514665 NOP2P46087 812 aaKnown RBP14.48□□□□□ -0.09
USP53-209ENST00000514665 GCKRQ14397 625 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 HEATR3Q7Z4Q2 680 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 VPS36Q86VN1 386 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 CCDC113Q9H0I3 377 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 TRPM2O94759 1503 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 TMCO5BA8MYB1 307 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 SSH3Q8TE77 659 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 ARFGAP3Q9NP61 516 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 LZTFL1Q9NQ48 299 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 MBD4O95243 580 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 PTH1RQ03431 593 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 BRAPQ7Z569 592 aa14.48□□□□□ -0.09
USP53-209ENST00000514665 KBTBD3Q8NAB2 608 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 EAF2Q96CJ1 260 aaPredicted RBP14.47□□□□□ -0.09
USP53-209ENST00000514665 CBX8Q9HC52 389 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 BABAM1Q9NWV8 329 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 TSPY3P0CV98 308 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 TSPY8P0CW00 308 aa14.47□□□□□ -0.09
USP53-209ENST00000514665 ME3Q16798 604 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms