RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	CBX8	Q9HC52	389 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TRMT112	Q9UI30	125 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GADD45B	O75293	160 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ACTN2	P35609	894 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CREB3L3	Q68CJ9	461 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	LDHAL6A	Q6ZMR3	332 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ANKRD18B	A2A2Z9	1011 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	BMP15	O95972	392 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CHML	P26374	656 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	LACTB	P83111	547 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	UBLCP1	Q8WVY7	318 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PRDM11	Q9NQV5	511 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	RPRD2	Q5VT52	1461 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GOLGA6C	A6NDK9	693 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NUTM2E	B1AL46	878 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CLGN	O14967	610 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GOLGA6D	P0CG33	693 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CCDC25	Q86WR0	208 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ANKRD24	Q8TF21	1146 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	KAT14	Q9H8E8	782 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	LMBRD1	Q9NUN5	540 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GOLGA6A	Q9NYA3	693 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SARNP	P82979	210 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TTF1	Q15361	905 aa	Predicted RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	RTN1	Q16799	776 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CNGA4	Q8IV77	575 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TBC1D5	Q92609	795 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	STIM2	Q9P246	746 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TRIM75P	A6NK02	468 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	VIM	P08670	466 aa	Known RBP	11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ZSCAN26	Q16670	478 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CEP85	Q6P2H3	762 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	RUFY3	Q7L099	469 aa		11.74	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	DTNB	O60941	627 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CCDC172	P0C7W6	258 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GPT	P24298	496 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	POTED	Q86YR6	584 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CCT6A	P40227	531 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SETDB1	Q15047	1291 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	DDX12P	Q92771	950 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NAPG	Q99747	312 aa	Predicted RBP	11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	LRRC27	Q9C0I9	530 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TMEM63C	Q9P1W3	806 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TMEM110-MUSTN1	A8MSY1	372 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ANKLE2	Q86XL3	938 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PA2G4	Q9UQ80	394 aa	Known RBP	11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PCK1	P35558	622 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TNNC1	P63316	161 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CUL5	Q93034	780 aa		11.73	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SBNO2	Q9Y2G9	1366 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	AMOT	Q4VCS5	1084 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	IGSF22	Q8N9C0	903 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	LMBR1	Q8WVP7	490 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TBCA	O75347	108 aa	Known RBP	11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	FER	P16591	822 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PPFIBP2	Q8ND30	876 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PPP1R12C	Q9BZL4	782 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GJC1	P36383	396 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	BUB1B	O60566	1050 aa	Predicted RBP	11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	STXBP4	Q6ZWJ1	553 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TSPYL6	Q8N831	410 aa		11.72	□□□□□ -0.53
PDLIM3-209	ENST00000514142	HGS	O14964	777 aa	Predicted RBP	11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	FANCC	Q00597	558 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NEK11	Q8NG66	645 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SEC62	Q99442	399 aa	Known RBP	11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CLSTN2	Q9H4D0	955 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	STX8	Q9UNK0	236 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	MAP2K2	P36507	400 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PRPH	P41219	470 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	RNASE9	P60153	205 aa	Known RBP	11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PDE4B	Q07343	736 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GSTA5	Q7RTV2	222 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PNMA8A	Q86V59	439 aa	Predicted RBP	11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	FERMT2	Q96AC1	680 aa		11.71	□□□□□ -0.53
PDLIM3-209	ENST00000514142	KCNH5	Q8NCM2	988 aa		11.71	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CHPF2	Q9P2E5	772 aa		11.71	□□□□□ -0.54
PDLIM3-209	ENST00000514142	KDM2B	Q8NHM5	1336 aa		11.71	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ZNF500	O60304	480 aa	Predicted RBP	11.71	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PPP4R3A	Q6IN85	833 aa		11.71	□□□□□ -0.54
PDLIM3-209	ENST00000514142	NAP1L3	Q99457	506 aa	Predicted RBP	11.71	□□□□□ -0.54
PDLIM3-209	ENST00000514142	ABCC5	O15440	1437 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	RXRA	P19793	462 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MAP3K9	P80192	1104 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	INTS8	Q75QN2	995 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	TSNARE1	Q96NA8	513 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	KRT23	Q9C075	422 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MTRF1L	Q9UGC7	380 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	CDK13	Q14004	1512 aa	Known RBP	11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	MRC2	Q9UBG0	1479 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	PARD3	Q8TEW0	1356 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	C8orf74	Q6P047	294 aa		11.7	□□□□□ -0.54
PDLIM3-209	ENST00000514142	BRAP	Q7Z569	592 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms