RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 HDLBPQ00341 1268 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 ANKMY2Q8IV38 441 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 MSL3Q8N5Y2 521 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 TRIML1Q8N9V2 468 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 FRMD6Q96NE9 622 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 UIMC1Q96RL1 719 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 MARF1Q9Y4F3 1742 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 GTF2E1P29083 439 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 ICE2Q659A1 982 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 DZIP3Q86Y13 1208 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 IRF2BPLQ9H1B7 796 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 CGNL1Q0VF96 1302 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 MOXD2PA6NHM9 499 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 NASPP49321 788 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 GEMIN4P57678 1058 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 NCOA4Q13772 614 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 TCEAL1Q15170 157 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 ARPC5LQ9BPX5 153 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 SELENOOQ9BVL4 669 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 EID1Q9Y6B2 187 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 PER1O15534 1290 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 HIP1RO75146 1068 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 IDI1Q13907 227 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 IFFO2Q5TF58 517 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 RELL1Q8IUW5 271 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 DNAAF2Q9NVR5 837 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 MAP3K20Q9NYL2 800 aaKnown RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 MAGED2Q9UNF1 606 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-209ENST00000508871 ADAMTS13Q76LX8 1427 aa4.6□□□□□ -1.67
NEDD4-209ENST00000508871 SOX5P35711 763 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 CASP2P42575 452 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 CHPFQ8IZ52 775 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 NGLY1Q96IV0 654 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 FEZ1Q99689 392 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 TMEM106CQ9BVX2 250 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 POLR3AO14802 1390 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-209ENST00000508871 LETM1O95202 739 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-209ENST00000508871 NDUFV2P19404 249 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 NFX1Q12986 1120 aaKnown RBP4.59□□□□□ -1.67
NEDD4-209ENST00000508871 PDIA6Q15084 440 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 SNX32Q86XE0 403 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 LEO1Q8WVC0 666 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-209ENST00000508871 NIF3L1Q9GZT8 377 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 IQSEC2Q5JU85 1478 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 CD163L1Q9NR16 1453 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L15C9J2P7 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L10C9JJH3 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L13C9JLJ4 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L12C9JPN9 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L11C9JVI0 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L21D6R901 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L18D6R9N7 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L22D6RA61 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L17D6RBQ6 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L19D6RCP7 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L20D6RJB6 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 AGRPO00253 132 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 KRT9P35527 623 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 TNNT3P45378 269 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L24Q0WX57 530 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 CFAP70Q5T0N1 1121 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 TRIM68Q6AZZ1 485 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 ANKS3Q6ZW76 656 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 NLRP13Q86W25 1043 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 HELLSQ9NRZ9 838 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 PRKAB1Q9Y478 270 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 RGPD1P0DJD0 1748 aa4.59□□□□□ -1.67
NEDD4-209ENST00000508871 MYCP01106 439 aaPredicted RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 CHRM1P11229 460 aaPredicted RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 RDXP35241 583 aaKnown RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 PLEKHG6Q3KR16 790 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 LRCH2Q5VUJ6 765 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 ENAHQ8N8S7 591 aaPredicted RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 SEPT11Q9NVA2 429 aaKnown RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 ABCC6O95255 1503 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 FAM208AQ9UK61 1670 aaKnown RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 PNMA6FA0A0J9YX94 578 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 ONECUT3O60422 494 aaPredicted RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 EIF4BP23588 611 aaKnown RBP4.59□□□□□ -1.68
NEDD4-209ENST00000508871 SEC13P55735 322 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 LRRN4Q8WUT4 740 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 SPON2Q9BUD6 331 aa4.59□□□□□ -1.68
NEDD4-209ENST00000508871 NKTRP30414 1462 aaKnown RBP4.58□□□□□ -1.68
NEDD4-209ENST00000508871 FAM13AO94988 1023 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 CASQ1P31415 396 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 TPD52P55327 224 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-209ENST00000508871 ALKBH2Q6NS38 261 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 JADE2Q9NQC1 790 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 SAP30BPQ9UHR5 308 aaKnown RBP4.58□□□□□ -1.68
NEDD4-209ENST00000508871 GTF2A1LQ9UNN4 478 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 NCOA3Q9Y6Q9 1424 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 TIPRLO75663 272 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 MATR3P43243 847 aaKnown RBP eCLIP4.58□□□□□ -1.688e-6■■■□□ 17.4
NEDD4-209ENST00000508871 NEK4P51957 841 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 NUP133Q8WUM0 1156 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 LRRC27Q9C0I9 530 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 PIK3C2AO00443 1686 aa4.58□□□□□ -1.68
NEDD4-209ENST00000508871 COL3A1P02461 1466 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-209ENST00000508871 EDC4Q6P2E9 1401 aaKnown RBP4.58□□□□□ -1.68
NEDD4-209ENST00000508871 PRPF4BQ13523 1007 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms