RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KCNF1Q9H3M0 494 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 C7orf69Q9H7B7 122 aa6.41□□□□□ -1.38
NUP54-208ENST00000508604 PDE12Q6L8Q7 609 aaKnown RBP6.4□□□□□ -1.38
NUP54-208ENST00000508604 CLEC10AQ8IUN9 316 aa6.4□□□□□ -1.38
NUP54-208ENST00000508604 TRIM42Q8IWZ5 723 aa6.4□□□□□ -1.38
NUP54-208ENST00000508604 FAM46AQ96IP4 442 aaKnown RBP6.4□□□□□ -1.38
NUP54-208ENST00000508604 MYRFLQ96LU7 910 aa6.4□□□□□ -1.38
NUP54-208ENST00000508604 ZMIZ1Q9ULJ6 1067 aa6.4□□□□□ -1.38
NUP54-208ENST00000508604 TNFRSF10BO14763 440 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 PCSK2P16519 638 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 ARL4DP49703 201 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 ANKRD34AQ69YU3 496 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 KIAA1211Q6ZU35 1233 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 ZNF438Q7Z4V0 828 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 ZDHHC13Q8IUH4 622 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 GIMAP7Q8NHV1 300 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 WNT8BQ93098 351 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 SH2B1Q9NRF2 756 aaPredicted RBP6.39□□□□□ -1.39
NUP54-208ENST00000508604 KCNK4Q9NYG8 393 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 H3BRJ5 948 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 TAL1P17542 331 aaPredicted RBP6.39□□□□□ -1.39
NUP54-208ENST00000508604 PIP4K2BP78356 416 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 RNF208Q9H0X6 261 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 ELP3Q9H9T3 547 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 OSGEPQ9NPF4 335 aa6.39□□□□□ -1.39
NUP54-208ENST00000508604 HMX2A2RU54 273 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 MED26O95402 600 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 EPHA1P21709 976 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 FAM69CQ0P6D2 419 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 FDX2Q6P4F2 183 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 FAM20CQ8IXL6 584 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 CEP120Q8N960 986 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 STK32AQ8WU08 396 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 FAM83CQ9BQN1 747 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 ADAM19Q9H013 955 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 HIF3AQ9Y2N7 669 aa6.38□□□□□ -1.39
NUP54-208ENST00000508604 OAS3Q9Y6K5 1087 aaKnown RBP6.38□□□□□ -1.39
NUP54-208ENST00000508604 GAS2O43903 313 aaKnown RBP6.37□□□□□ -1.39
NUP54-208ENST00000508604 WNT11O96014 354 aa6.37□□□□□ -1.39
NUP54-208ENST00000508604 CYP2E1P05181 493 aaPredicted RBP6.37□□□□□ -1.39
NUP54-208ENST00000508604 BMP3P12645 472 aa6.37□□□□□ -1.39
NUP54-208ENST00000508604 YBX3P16989 372 aaKnown RBP eCLIP6.37□□□□□ -1.391e-7■■■■□ 22.1
NUP54-208ENST00000508604 FAM26DQ5JW98 314 aa6.37□□□□□ -1.39
NUP54-208ENST00000508604 BEND4Q6ZU67 534 aa6.37□□□□□ -1.39
NUP54-208ENST00000508604 KLHDC7BQ96G42 594 aa6.37□□□□□ -1.39
NUP54-208ENST00000508604 POP1Q99575 1024 aaKnown RBP6.37□□□□□ -1.39
NUP54-208ENST00000508604 DDX3YO15523 660 aaKnown RBP6.36□□□□□ -1.39
NUP54-208ENST00000508604 UBASH3BQ8TF42 649 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 FOXD4L4Q8WXT5 416 aaPredicted RBP6.36□□□□□ -1.39
NUP54-208ENST00000508604 PMEPA1Q969W9 287 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 NUDT16Q96DE0 195 aaKnown RBP6.36□□□□□ -1.39
NUP54-208ENST00000508604 FMNL2Q96PY5 1086 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 RUSC1Q9BVN2 902 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 ATG7O95352 703 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 CES1P23141 567 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 CAPN12Q6ZSI9 719 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.36□□□□□ -1.39
NUP54-208ENST00000508604 SHKBP1Q8TBC3 707 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 SLC7A3Q8WY07 619 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 KANSL3Q9P2N6 904 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 RNF114Q9Y508 228 aa6.36□□□□□ -1.39
NUP54-208ENST00000508604 SPINK2P20155 84 aa6.35□□□□□ -1.39
NUP54-208ENST00000508604 NLRP12P59046 1061 aa6.35□□□□□ -1.39
NUP54-208ENST00000508604 TMEM164Q5U3C3 297 aa6.35□□□□□ -1.39
NUP54-208ENST00000508604 DTX1Q86Y01 620 aa6.35□□□□□ -1.39
NUP54-208ENST00000508604 KRTAP19-1Q8IUB9 90 aa6.35□□□□□ -1.39
NUP54-208ENST00000508604 CLP1Q92989 425 aaKnown RBP6.35□□□□□ -1.39
NUP54-208ENST00000508604 TMEM63CQ9P1W3 806 aa6.35□□□□□ -1.39
NUP54-208ENST00000508604 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.34□□□□□ -1.39
NUP54-208ENST00000508604 ZBTB39O15060 712 aa6.34□□□□□ -1.39
NUP54-208ENST00000508604 ADAM11O75078 769 aa6.34□□□□□ -1.39
NUP54-208ENST00000508604 ATG3Q9NT62 314 aa6.34□□□□□ -1.39
NUP54-208ENST00000508604 PRR19A6NJB7 356 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 WDR64B1ANS9 1081 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 PDE2AO00408 941 aaPredicted RBP6.33□□□□□ -1.4
NUP54-208ENST00000508604 RXRBP28702 533 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 PREPP48147 710 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 SALL4Q9UJQ4 1053 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 TM4SF5O14894 197 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 C19orf57Q0VDD7 668 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 NUTM2GQ5VZR2 741 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 ADAMTSL4Q6UY14 1074 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 ZMYND15Q9H091 742 aa6.33□□□□□ -1.4
NUP54-208ENST00000508604 ATP2B4P23634 1241 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 DNM1Q05193 864 aaKnown RBP6.32□□□□□ -1.4
NUP54-208ENST00000508604 C8orf34Q49A92 452 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 XKR5Q6UX68 686 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 EDEM1Q92611 657 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 CYP4F12Q9HCS2 524 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 DZANK1Q9NVP4 752 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 PIM2Q9P1W9 311 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 CNTN3Q9P232 1028 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 ANGEL1Q9UNK9 670 aaKnown RBP6.32□□□□□ -1.4
NUP54-208ENST00000508604 LEMD3Q9Y2U8 911 aa6.32□□□□□ -1.4
NUP54-208ENST00000508604 MEGF11A6BM72 1044 aa6.31□□□□□ -1.4
NUP54-208ENST00000508604 MAP4P27816 1152 aaKnown RBP6.31□□□□□ -1.4
NUP54-208ENST00000508604 C1orf127Q8N9H9 656 aa6.31□□□□□ -1.4
NUP54-208ENST00000508604 C12orf50Q8NA57 414 aaPredicted RBP6.31□□□□□ -1.4
NUP54-208ENST00000508604 MFSD14AQ96MC6 490 aa6.31□□□□□ -1.4
NUP54-208ENST00000508604 OSBPL1AQ9BXW6 950 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms