RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PARP2Q9UGN5 583 aa12.65□□□□□ -0.38
LIMCH1-208ENST00000508501 AKR1B15C9JRZ8 316 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-208ENST00000508501 GOLGA8KD6RF30 607 aa12.65□□□□□ -0.38
LIMCH1-208ENST00000508501 NEK11Q8NG66 645 aa12.65□□□□□ -0.38
LIMCH1-208ENST00000508501 CAPZA3Q96KX2 299 aa12.65□□□□□ -0.38
LIMCH1-208ENST00000508501 ATP6V0A2Q9Y487 856 aa12.65□□□□□ -0.38
LIMCH1-208ENST00000508501 WDHD1O75717 1129 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 MAP3K7CLP57077 242 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 PPP1R7Q15435 360 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 TSR2Q969E8 191 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 TMX3Q96JJ7 454 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 CEP104O60308 925 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 F13A1P00488 732 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 COG7P83436 770 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 SNCBQ16143 134 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 RNF8O76064 485 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 PRIM1P49642 420 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 ZC3H6P61129 1189 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 STAG1Q8WVM7 1258 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 ZNF830Q96NB3 372 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 NEK1Q96PY6 1258 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 DACT1Q9NYF0 836 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 PTGS1P23219 599 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 OAS2P29728 719 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 PDCD2Q16342 344 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 USP48Q86UV5 1035 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 IL1RAPL2Q9NP60 686 aa12.64□□□□□ -0.39
LIMCH1-208ENST00000508501 IFIT3O14879 490 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 USP5P45974 858 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 ARMC9Q7Z3E5 817 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 SYCP3Q8IZU3 236 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 PUF60Q9UHX1 559 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 UTP11Q9Y3A2 253 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 TROVE2P10155 538 aaKnown RBP eCLIP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 TBC1D9Q6ZT07 1266 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 HOMER3Q9NSC5 361 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 SEPT10Q9P0V9 454 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 PPP1R9AQ9ULJ8 1098 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 GUCA1BQ9UMX6 200 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 PTPRCP08575 1304 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 RNASELQ05823 741 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 NFE2L2Q16236 605 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 RILPL1Q5EBL4 403 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 DUSP27Q5VZP5 1158 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 SLF2Q8IX21 1173 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 EPSTI1Q96J88 318 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 TACO1Q9BSH4 297 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 NUP58Q9BVL2 599 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 DRC3Q9H069 523 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 ECHDC1Q9NTX5 307 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 RIOK3O14730 519 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 ARHGAP6O43182 974 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 IFIT1P09914 478 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 GNAQP50148 359 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 MYL5Q02045 173 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 DNAJC25Q9H1X3 360 aa12.63□□□□□ -0.39
LIMCH1-208ENST00000508501 I3L4J1 428 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 RARSP54136 660 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 CCDC122Q5T0U0 273 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 MAIP1Q8WWC4 291 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 PANK2Q9BZ23 570 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 CAPN7Q9Y6W3 813 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 NUTM2FA1L443 756 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 KIF1CO43896 1103 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 IDH1O75874 414 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 BRAPQ7Z569 592 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 NCOA7Q8NI08 942 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 CCT6BQ92526 530 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 NLRP2Q9NX02 1062 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 TMOD2Q9NZR1 351 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 KLHL14Q9P2G3 628 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 A0A087WUV0 522 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 TATP17735 454 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 DMTNQ08495 405 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 HDAC1Q13547 482 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 CCDC170Q8IYT3 715 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 GDPD2Q9HCC8 539 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 SMIM24O75264 130 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 ERCC5P28715 1186 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 IGHMBP2P38935 993 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 MKNK2Q9HBH9 465 aa12.62□□□□□ -0.39
LIMCH1-208ENST00000508501 RTL1A6NKG5 1358 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 HSPA1LP34931 641 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 ZNF445P59923 1031 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 SATB1Q01826 763 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 TMTC1Q8IUR5 882 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 FHOD3Q2V2M9 1422 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 HHATQ5VTY9 493 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 SRGAP1Q7Z6B7 1085 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 TXNDC9O14530 226 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 GAS8O95995 478 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 STAT6P42226 847 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 CYP26C1Q6V0L0 522 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 GSDMBQ8TAX9 411 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 FAM71BQ8TC56 605 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 P3H4Q92791 437 aa12.61□□□□□ -0.39
LIMCH1-208ENST00000508501 IMPG2Q9BZV3 1241 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms