RNA–Protein interactions for RNA: ENST00000498548.1

NR1H3-227, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 3

Gene NR1H3, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-227ENST00000498548 USP48Q86UV5 1035 aa20.36■□□□□ 0.85
NR1H3-227ENST00000498548 USP17L3A6NCW0 530 aa20.35■□□□□ 0.85
NR1H3-227ENST00000498548 USP17L4A6NCW7 530 aa20.35■□□□□ 0.85
NR1H3-227ENST00000498548 KCNJ4P48050 445 aa20.35■□□□□ 0.85
NR1H3-227ENST00000498548 DEFB115Q30KQ5 88 aa20.35■□□□□ 0.85
NR1H3-227ENST00000498548 USP17L1Q7RTZ2 530 aa20.35■□□□□ 0.85
NR1H3-227ENST00000498548 ZC3H15Q8WU90 426 aaKnown RBP20.35■□□□□ 0.85
NR1H3-227ENST00000498548 HSPA1AP0DMV8 641 aaKnown RBP20.34■□□□□ 0.85
NR1H3-227ENST00000498548 HSPA1BP0DMV9 641 aaKnown RBP20.34■□□□□ 0.85
NR1H3-227ENST00000498548 LDHAL6AQ6ZMR3 332 aa20.34■□□□□ 0.85
NR1H3-227ENST00000498548 ZNF408Q9H9D4 720 aa20.34■□□□□ 0.85
NR1H3-227ENST00000498548 A0A1B0GUL6 1792 aa20.34■□□□□ 0.85
NR1H3-227ENST00000498548 UTYO14607 1347 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 ASTN2O75129 1339 aaPredicted RBP20.33■□□□□ 0.85
NR1H3-227ENST00000498548 CELF2O95319 508 aaKnown RBP20.33■□□□□ 0.85
NR1H3-227ENST00000498548 KIF4BQ2VIQ3 1234 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 CDC37L1Q7L3B6 337 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 AGBL3Q8NEM8 1001 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 GMLQ99445 158 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 PUS3Q9BZE2 481 aaKnown RBP20.33■□□□□ 0.85
NR1H3-227ENST00000498548 COA1Q9GZY4 146 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 BICC1Q9H694 974 aaKnown RBP20.33■□□□□ 0.85
NR1H3-227ENST00000498548 CNNM1Q9NRU3 951 aa20.33■□□□□ 0.85
NR1H3-227ENST00000498548 NOB1Q9ULX3 412 aaKnown RBP20.33■□□□□ 0.85
NR1H3-227ENST00000498548 RASSF10A6NK89 507 aa20.31■□□□□ 0.84
NR1H3-227ENST00000498548 DACT2Q5SW24 774 aa20.31■□□□□ 0.84
NR1H3-227ENST00000498548 PAXIP1Q6ZW49 1069 aaPredicted RBP20.31■□□□□ 0.84
NR1H3-227ENST00000498548 USP44Q9H0E7 712 aa20.31■□□□□ 0.84
NR1H3-227ENST00000498548 ZNF646O15015 1829 aaPredicted RBP20.31■□□□□ 0.84
NR1H3-227ENST00000498548 ADM5C9JUS6 153 aa20.3■□□□□ 0.84
NR1H3-227ENST00000498548 USP17L8P0C7I0 530 aa20.3■□□□□ 0.84
NR1H3-227ENST00000498548 ZNF280AP59817 542 aaPredicted RBP20.3■□□□□ 0.84
NR1H3-227ENST00000498548 GRM1Q13255 1194 aa20.3■□□□□ 0.84
NR1H3-227ENST00000498548 ANKRD44Q8N8A2 993 aa20.3■□□□□ 0.84
NR1H3-227ENST00000498548 IRS2Q9Y4H2 1338 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 GTF2IP78347 998 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 SCARF1Q14162 830 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 TTLL5Q6EMB2 1281 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 CYP4F22Q6NT55 531 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 KRT26Q7Z3Y9 468 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 DCPSQ96C86 337 aaKnown RBP20.29■□□□□ 0.84
NR1H3-227ENST00000498548 CD209Q9NNX6 404 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 MYOZ2Q9NPC6 264 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 TLL2Q9Y6L7 1015 aa20.29■□□□□ 0.84
NR1H3-227ENST00000498548 WDR33Q9C0J8 1336 aaKnown RBP20.28■□□□□ 0.84
NR1H3-227ENST00000498548 CT47B1P0C2W7 299 aaPredicted RBP20.28■□□□□ 0.84
NR1H3-227ENST00000498548 RARSP54136 660 aaKnown RBP20.28■□□□□ 0.84
NR1H3-227ENST00000498548 STRIP1Q5VSL9 837 aa20.28■□□□□ 0.84
NR1H3-227ENST00000498548 GGA3Q9NZ52 723 aa20.28■□□□□ 0.84
NR1H3-227ENST00000498548 SCAF8Q9UPN6 1271 aaKnown RBP20.28■□□□□ 0.84
NR1H3-227ENST00000498548 RABL6Q3YEC7 729 aaPredicted RBP20.27■□□□□ 0.84
NR1H3-227ENST00000498548 LRRC24Q50LG9 513 aa20.27■□□□□ 0.84
NR1H3-227ENST00000498548 KLHDC4Q8TBB5 520 aa20.27■□□□□ 0.84
NR1H3-227ENST00000498548 PCNTO95613 3336 aa20.27■□□□□ 0.83
NR1H3-227ENST00000498548 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
NR1H3-227ENST00000498548 COL13A1Q5TAT6 717 aaPredicted RBP20.26■□□□□ 0.83
NR1H3-227ENST00000498548 ANGEL2Q5VTE6 544 aaKnown RBP20.26■□□□□ 0.83
NR1H3-227ENST00000498548 CAPNS2Q96L46 248 aa20.26■□□□□ 0.83
NR1H3-227ENST00000498548 JAG2Q9Y219 1238 aa20.26■□□□□ 0.83
NR1H3-227ENST00000498548 RIPOR2Q9Y4F9 1068 aa20.26■□□□□ 0.83
NR1H3-227ENST00000498548 ZNF609O15014 1411 aa20.26■□□□□ 0.83
NR1H3-227ENST00000498548 NBPF9Q3BBW0 867 aa20.25■□□□□ 0.83
NR1H3-227ENST00000498548 C15orf52Q6ZUT6 534 aaKnown RBP20.25■□□□□ 0.83
NR1H3-227ENST00000498548 SAPCD2Q86UD0 394 aa20.25■□□□□ 0.83
NR1H3-227ENST00000498548 KIAA0825Q8IV33 1275 aa20.25■□□□□ 0.83
NR1H3-227ENST00000498548 API5Q9BZZ5 524 aaKnown RBP20.24■□□□□ 0.83
NR1H3-227ENST00000498548 FOXN1O15353 648 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 AOC2O75106 756 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 GYG1P46976 350 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 BRPF1P55201 1214 aaPredicted RBP20.23■□□□□ 0.83
NR1H3-227ENST00000498548 ZNF804AQ7Z570 1209 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 SULF1Q8IWU6 871 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 TNNQ9UQP3 1299 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 MYO3BQ8WXR4 1341 aa20.23■□□□□ 0.83
NR1H3-227ENST00000498548 BCAR3O75815 825 aa20.22■□□□□ 0.83
NR1H3-227ENST00000498548 IL1R1P14778 569 aa20.22■□□□□ 0.83
NR1H3-227ENST00000498548 OGFOD1Q8N543 542 aa20.22■□□□□ 0.83
NR1H3-227ENST00000498548 CERS5Q8N5B7 392 aa20.22■□□□□ 0.83
NR1H3-227ENST00000498548 F8W031 263 aaPredicted RBP20.21■□□□□ 0.83
NR1H3-227ENST00000498548 SASH1O94885 1247 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 ECE1P42892 770 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 UBE4AQ14139 1066 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 METTL24Q5JXM2 366 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 PRAMEF18Q5VWM3 479 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 CDCA5Q96FF9 252 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 WBP1LQ9NX94 342 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 MROH5Q6ZUA9 1318 aa20.21■□□□□ 0.83
NR1H3-227ENST00000498548 WNT10BO00744 389 aa20.2■□□□□ 0.82
NR1H3-227ENST00000498548 UBTFL1P0CB47 393 aaPredicted RBP20.2■□□□□ 0.82
NR1H3-227ENST00000498548 RFX5P48382 616 aaPredicted RBP20.2■□□□□ 0.82
NR1H3-227ENST00000498548 HUNKP57058 714 aa20.2■□□□□ 0.82
NR1H3-227ENST00000498548 FAM84BQ96KN1 310 aaPredicted RBP20.2■□□□□ 0.82
NR1H3-227ENST00000498548 GBA2Q9HCG7 927 aaPredicted RBP20.2■□□□□ 0.82
NR1H3-227ENST00000498548 HDAC9Q9UKV0 1011 aa20.2■□□□□ 0.82
NR1H3-227ENST00000498548 PCDHAC2Q9Y5I4 1007 aa20.2■□□□□ 0.82
NR1H3-227ENST00000498548 HIBADHP31937 336 aaKnown RBP20.19■□□□□ 0.82
NR1H3-227ENST00000498548 IFFO2Q5TF58 517 aa20.19■□□□□ 0.82
NR1H3-227ENST00000498548 C2orf69Q8N8R5 385 aa20.19■□□□□ 0.82
NR1H3-227ENST00000498548 FRAT1Q92837 279 aaPredicted RBP20.19■□□□□ 0.82
NR1H3-227ENST00000498548 AIDAQ96BJ3 306 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms