RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HSPD1P10809 573 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 MCM5P33992 734 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 KRT85P78386 507 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 GUCY1B3Q02153 619 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 KRT32Q14532 448 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 NAA30Q147X3 362 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 BICD2Q8TD16 824 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 C16orf45Q96MC5 204 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 ISCA1Q9BUE6 129 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 GPHNQ9NQX3 736 aaPredicted RBP19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 TOGARAM1Q9Y4F4 1720 aa19.5■□□□□ 0.71
CCDC88B-210ENST00000494566 ZNF592Q92610 1267 aa19.49■□□□□ 0.71
CCDC88B-210ENST00000494566 OSBP2Q969R2 916 aa19.49■□□□□ 0.71
CCDC88B-210ENST00000494566 ANO6Q4KMQ2 910 aa19.49■□□□□ 0.71
CCDC88B-210ENST00000494566 ATG3Q9NT62 314 aa19.49■□□□□ 0.71
CCDC88B-210ENST00000494566 SH3TC1Q8TE82 1336 aa19.49■□□□□ 0.71
CCDC88B-210ENST00000494566 WASHC4Q2M389 1173 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 XAGE2Q96GT9 111 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 TTC39AQ5SRH9 613 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 ZMYM1Q5SVZ6 1142 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 CCDC186Q7Z3E2 898 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 RAB11FIP4Q86YS3 637 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 MYRIPQ8NFW9 859 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 PPP4R3BQ5MIZ7 849 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 NUP62CLQ9H1M0 184 aa19.48■□□□□ 0.71
CCDC88B-210ENST00000494566 RIOK3O14730 519 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 PDCP20941 246 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 KIF6Q6ZMV9 814 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 SPATA32Q96LK8 384 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 SLC4A9Q96Q91 983 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 TRIM5Q9C035 493 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 DNAJC25Q9H1X3 360 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 TNMDQ9H2S6 317 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 E7EWF7 191 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 FAM184AQ8NB25 1140 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 PALLDQ8WX93 1383 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 LAMA4Q16363 1823 aa19.47■□□□□ 0.71
CCDC88B-210ENST00000494566 H3BQV1 296 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 RNF113AO15541 343 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 NR1I2O75469 434 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 CCDC192P0DO97 292 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 ZAP70P43403 619 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 TYRO3Q06418 890 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 IFFO2Q5TF58 517 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 TNS2Q63HR2 1409 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 ARID5BQ14865 1188 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 BCL2L12Q9HB09 334 aa19.46■□□□□ 0.71
CCDC88B-210ENST00000494566 FUCA2Q9BTY2 467 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 ALDH8A1Q9H2A2 487 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 GREM2Q9H772 168 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 HELLSQ9NRZ9 838 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 MAP3K11Q16584 847 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 DHX32Q7L7V1 743 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 GPR108Q9NPR9 543 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 TBC1D2BQ9UPU7 963 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 CTDNEP1O95476 244 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 IFIT5Q13325 482 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 ATP2B3Q16720 1220 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 ZBTB1Q9Y2K1 713 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 MRVI1Q9Y6F6 885 aa19.45■□□□□ 0.7
CCDC88B-210ENST00000494566 CCDC158Q5M9N0 1113 aa19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 LEO1Q8WVC0 666 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 KIF3AQ9Y496 699 aa19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 V9GYY5 206 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 PAPPAQ13219 1627 aa19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 STRCQ7RTU9 1775 aa19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 ABCA3Q99758 1704 aa19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 CBX8Q9HC52 389 aa19.44■□□□□ 0.7
CCDC88B-210ENST00000494566 RFX7Q2KHR2 1363 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 PLEKHG2Q9H7P9 1386 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 CIAO1O76071 339 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 U2AF2P26368 475 aaKnown RBP eCLIP19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 TERF1P54274 439 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 UVSSAQ2YD98 709 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 PUS7LQ9H0K6 701 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 FOXP2O15409 715 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 METTL24Q5JXM2 366 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 PGBD1Q96JS3 809 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 DSCC1Q9BVC3 393 aa19.43■□□□□ 0.7
CCDC88B-210ENST00000494566 PTPDC1A2A3K4 754 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 NPHP1O15259 732 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 STARD3NLO95772 234 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 ITGA6P23229 1130 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 RESTQ13127 1097 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 LDHAL6AQ6ZMR3 332 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 NSUN7Q8NE18 718 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 HELBQ8NG08 1087 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 SNAP23O00161 211 aa19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 PCCAP05165 728 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 ZBTB38Q8NAP3 1195 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-210ENST00000494566 DENND2AQ9ULE3 1009 aa19.41■□□□□ 0.7
CCDC88B-210ENST00000494566 KIAA1524Q8TCG1 905 aa19.41■□□□□ 0.7
CCDC88B-210ENST00000494566 MAP3K15Q6ZN16 1313 aa19.41■□□□□ 0.7
CCDC88B-210ENST00000494566 LETM1O95202 739 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-210ENST00000494566 EXOSC10Q01780 885 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-210ENST00000494566 NLRP10Q86W26 655 aa19.41■□□□□ 0.7
CCDC88B-210ENST00000494566 PFKFB2O60825 505 aa19.4■□□□□ 0.7
CCDC88B-210ENST00000494566 OTUD7BQ6GQQ9 843 aa19.4■□□□□ 0.7
CCDC88B-210ENST00000494566 GIGYF2Q6Y7W6 1299 aaKnown RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms