RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 LIG1P18858 919 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 GTPBP4Q9BZE4 634 aaKnown RBP21.84■■□□□ 1.09
COL27A1-207ENST00000494090 TMCO5BA8MYB1 307 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 SPTLC2O15270 562 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 RTL1A6NKG5 1358 aa21.84■■□□□ 1.09
COL27A1-207ENST00000494090 GNAT2P19087 354 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 GOPCQ9HD26 462 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 JADE2Q9NQC1 790 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 KIAA0556O60303 1618 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 ZNF804AQ7Z570 1209 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 B4DLN1 442 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 RNF113AO15541 343 aaKnown RBP21.83■■□□□ 1.09
COL27A1-207ENST00000494090 CALM1P0DP23 149 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 CALM2P0DP24 149 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 CALM3P0DP25 149 aa21.83■■□□□ 1.09
COL27A1-207ENST00000494090 MRPL12P52815 198 aaKnown RBP21.83■■□□□ 1.09
COL27A1-207ENST00000494090 ASXL2Q76L83 1435 aa21.83■■□□□ 1.08
COL27A1-207ENST00000494090 ZMYM4Q5VZL5 1548 aa21.83■■□□□ 1.08
COL27A1-207ENST00000494090 HLTFQ14527 1009 aaKnown RBP eCLIP21.83■■□□□ 1.086e-8■□□□□ 10.4
COL27A1-207ENST00000494090 SLC9C2Q5TAH2 1124 aa21.83■■□□□ 1.08
COL27A1-207ENST00000494090 OGFOD1Q8N543 542 aa21.83■■□□□ 1.08
COL27A1-207ENST00000494090 DRC1Q96MC2 740 aa21.83■■□□□ 1.08
COL27A1-207ENST00000494090 PLCG2P16885 1265 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 AFMP43652 599 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 NAA16Q6N069 864 aaPredicted RBP21.82■■□□□ 1.08
COL27A1-207ENST00000494090 SPDYE4A6NLX3 237 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 SPECC1Q5M775 1068 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 GTF2F1P35269 517 aaKnown RBP eCLIP21.82■■□□□ 1.082e-6■■■□□ 19
COL27A1-207ENST00000494090 ACTN2P35609 894 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 ATP6V1AP38606 617 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 CKAP4Q07065 602 aaKnown RBP21.82■■□□□ 1.08
COL27A1-207ENST00000494090 KRT222Q8N1A0 295 aa21.82■■□□□ 1.08
COL27A1-207ENST00000494090 PZPP20742 1482 aa21.81■■□□□ 1.08
COL27A1-207ENST00000494090 CYLC1P35663 651 aaPredicted RBP21.81■■□□□ 1.08
COL27A1-207ENST00000494090 KRT24Q2M2I5 525 aa21.81■■□□□ 1.08
COL27A1-207ENST00000494090 TBC1D5Q92609 795 aa21.81■■□□□ 1.08
COL27A1-207ENST00000494090 MARCKSP29966 332 aaPredicted RBP21.81■■□□□ 1.08
COL27A1-207ENST00000494090 STAT6P42226 847 aa21.81■■□□□ 1.08
COL27A1-207ENST00000494090 UTP14AQ9BVJ6 771 aaKnown RBP21.81■■□□□ 1.08
COL27A1-207ENST00000494090 SRRTQ9BXP5 876 aaKnown RBP21.81■■□□□ 1.08
COL27A1-207ENST00000494090 DNAI1Q9UI46 699 aa21.81■■□□□ 1.08
COL27A1-207ENST00000494090 AKR1B10O60218 316 aa21.81■■□□□ 1.08
COL27A1-207ENST00000494090 TTC12Q9H892 705 aaPredicted RBP21.81■■□□□ 1.08
COL27A1-207ENST00000494090 SYT1P21579 422 aa21.8■■□□□ 1.08
COL27A1-207ENST00000494090 NOP2P46087 812 aaKnown RBP21.8■■□□□ 1.08
COL27A1-207ENST00000494090 BCCIPQ9P287 314 aaKnown RBP eCLIP21.8■■□□□ 1.08
COL27A1-207ENST00000494090 DHX32Q7L7V1 743 aaKnown RBP21.8■■□□□ 1.08
COL27A1-207ENST00000494090 BICD1Q96G01 975 aa21.8■■□□□ 1.08
COL27A1-207ENST00000494090 KDM2BQ8NHM5 1336 aa21.8■■□□□ 1.08
COL27A1-207ENST00000494090 INSRP06213 1382 aa21.8■■□□□ 1.08
COL27A1-207ENST00000494090 ZSWIM4Q9H7M6 989 aa21.8■■□□□ 1.08
COL27A1-207ENST00000494090 FSD2A1L4K1 749 aa21.79■■□□□ 1.08
COL27A1-207ENST00000494090 CALML3P27482 149 aa21.79■■□□□ 1.08
COL27A1-207ENST00000494090 EYA1Q99502 592 aa21.79■■□□□ 1.08
COL27A1-207ENST00000494090 RTL9Q8NET4 1388 aa21.79■■□□□ 1.08
COL27A1-207ENST00000494090 BRAPQ7Z569 592 aa21.79■■□□□ 1.08
COL27A1-207ENST00000494090 BBXQ8WY36 941 aaPredicted RBP21.79■■□□□ 1.08
COL27A1-207ENST00000494090 WDR7Q9Y4E6 1490 aa21.79■■□□□ 1.08
COL27A1-207ENST00000494090 CTAGE15A4D2H0 777 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 CTAGE8P0CG41 777 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 KRT13P13646 458 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 DDB1Q16531 1140 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 ATL3Q6DD88 541 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 CTAGE6Q86UF2 777 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 CTAGE4Q8IX94 777 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 DNMT1P26358 1616 aaKnown RBP21.78■■□□□ 1.08
COL27A1-207ENST00000494090 CWF19L2Q2TBE0 894 aaKnown RBP21.78■■□□□ 1.08
COL27A1-207ENST00000494090 PTPDC1A2A3K4 754 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 TRIM75PA6NK02 468 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 LRRC45Q96CN5 670 aa21.78■■□□□ 1.08
COL27A1-207ENST00000494090 SPAG5Q96R06 1193 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 ABCC10Q5T3U5 1492 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 APOBRQ0VD83 1088 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 ARFGAP3Q9NP61 516 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 PSMA7O14818 248 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 SLU7O95391 586 aaKnown RBP21.77■■□□□ 1.08
COL27A1-207ENST00000494090 MYCNP04198 464 aaPredicted RBP21.77■■□□□ 1.08
COL27A1-207ENST00000494090 NF2P35240 595 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 PRPHP41219 470 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 TPTE2Q6XPS3 522 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 NIP7Q9Y221 180 aaKnown RBP eCLIP21.77■■□□□ 1.08
COL27A1-207ENST00000494090 LMAN1P49257 510 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 C6orf50Q9HD87 102 aa21.77■■□□□ 1.08
COL27A1-207ENST00000494090 CCDC175P0C221 793 aa21.76■■□□□ 1.07
COL27A1-207ENST00000494090 IL2RBP14784 551 aa21.76■■□□□ 1.07
COL27A1-207ENST00000494090 TFCP2Q12800 502 aa21.76■■□□□ 1.07
COL27A1-207ENST00000494090 RNF187Q5TA31 235 aaPredicted RBP21.76■■□□□ 1.07
COL27A1-207ENST00000494090 BABAM1Q9NWV8 329 aa21.76■■□□□ 1.07
COL27A1-207ENST00000494090 PUF60Q9UHX1 559 aaKnown RBP21.76■■□□□ 1.07
COL27A1-207ENST00000494090 PRPF4BQ13523 1007 aaKnown RBP21.76■■□□□ 1.07
COL27A1-207ENST00000494090 MAATS1Q7Z4T9 603 aa21.75■■□□□ 1.07
COL27A1-207ENST00000494090 TSNARE1Q96NA8 513 aa21.75■■□□□ 1.07
COL27A1-207ENST00000494090 ANKRD2Q9GZV1 360 aa21.75■■□□□ 1.07
COL27A1-207ENST00000494090 LMOD1P29536 600 aaPredicted RBP21.75■■□□□ 1.07
COL27A1-207ENST00000494090 GIGYF2Q6Y7W6 1299 aaKnown RBP21.75■■□□□ 1.07
COL27A1-207ENST00000494090 LRRC59Q96AG4 307 aaKnown RBP21.75■■□□□ 1.07
COL27A1-207ENST00000494090 AOX1Q06278 1338 aa21.75■■□□□ 1.07
COL27A1-207ENST00000494090 MAGEB6P1A0A0J9YX57 407 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 HSP90AA4PQ58FG1 418 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 CEP112Q8N8E3 955 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms