RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ZNF277Q9NRM2 450 aaPredicted RBP15.6■□□□□ 0.09
UPF3A-210ENST00000493727 ERBB4Q15303 1308 aa15.6■□□□□ 0.09
UPF3A-210ENST00000493727 COL4A5P29400 1685 aa15.6■□□□□ 0.09
UPF3A-210ENST00000493727 KIF6Q6ZMV9 814 aa15.59■□□□□ 0.09
UPF3A-210ENST00000493727 WBP1LQ9NX94 342 aa15.59■□□□□ 0.09
UPF3A-210ENST00000493727 TSPYL4Q9UJ04 414 aa15.59■□□□□ 0.09
UPF3A-210ENST00000493727 HACL1Q9UJ83 578 aa15.59■□□□□ 0.09
UPF3A-210ENST00000493727 RCCD1A6NED2 376 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 RASSF10A6NK89 507 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 GOLGA8CPA6NN73 597 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 FZD9O00144 591 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 ALDH1B1P30837 517 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 CTCFP49711 727 aaPredicted RBP15.58■□□□□ 0.08
UPF3A-210ENST00000493727 TSR2Q969E8 191 aaKnown RBP15.58■□□□□ 0.08
UPF3A-210ENST00000493727 BABAM1Q9NWV8 329 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 RNF123Q5XPI4 1314 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 MAP3K15Q6ZN16 1313 aa15.58■□□□□ 0.08
UPF3A-210ENST00000493727 EPHX2P34913 555 aa15.57■□□□□ 0.08
UPF3A-210ENST00000493727 HLFQ16534 295 aa15.57■□□□□ 0.08
UPF3A-210ENST00000493727 TPRNQ4KMQ1 711 aa15.57■□□□□ 0.08
UPF3A-210ENST00000493727 EAPPQ56P03 285 aaPredicted RBP15.57■□□□□ 0.08
UPF3A-210ENST00000493727 RTKN2Q8IZC4 609 aa15.57■□□□□ 0.08
UPF3A-210ENST00000493727 FANCIQ9NVI1 1328 aa15.57■□□□□ 0.08
UPF3A-210ENST00000493727 IBTKQ9P2D0 1353 aaPredicted RBP15.57■□□□□ 0.08
UPF3A-210ENST00000493727 TRPM7Q96QT4 1865 aa15.57■□□□□ 0.08
UPF3A-210ENST00000493727 FAM177BA6PVY3 158 aa15.56■□□□□ 0.08
UPF3A-210ENST00000493727 IARSP41252 1262 aaKnown RBP15.56■□□□□ 0.08
UPF3A-210ENST00000493727 WNT2BQ93097 391 aa15.56■□□□□ 0.08
UPF3A-210ENST00000493727 MBIPQ9NS73 344 aa15.56■□□□□ 0.08
UPF3A-210ENST00000493727 ABCC12Q96J65 1359 aa15.56■□□□□ 0.08
UPF3A-210ENST00000493727 RIC1Q4ADV7 1423 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 ZNF853P0CG23 659 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 DNAJB2P25686 324 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 CRY2Q49AN0 593 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 DUSP27Q5VZP5 1158 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 PNMA8AQ86V59 439 aaPredicted RBP15.55■□□□□ 0.08
UPF3A-210ENST00000493727 GPC2Q8N158 579 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 RNF166Q96A37 237 aaPredicted RBP15.55■□□□□ 0.08
UPF3A-210ENST00000493727 AIDAQ96BJ3 306 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 SLC24A3Q9HC58 644 aa15.55■□□□□ 0.08
UPF3A-210ENST00000493727 CHL1O00533 1208 aa15.54■□□□□ 0.08
UPF3A-210ENST00000493727 HSPA8P11142 646 aaKnown RBP15.54■□□□□ 0.08
UPF3A-210ENST00000493727 MYL6BP14649 208 aa15.54■□□□□ 0.08
UPF3A-210ENST00000493727 LBX1P52954 281 aa15.54■□□□□ 0.08
UPF3A-210ENST00000493727 MAP1SQ66K74 1059 aaPredicted RBP15.54■□□□□ 0.08
UPF3A-210ENST00000493727 CNTROBQ8N137 903 aa15.54■□□□□ 0.08
UPF3A-210ENST00000493727 ANKK1Q8NFD2 765 aa15.54■□□□□ 0.08
UPF3A-210ENST00000493727 KCTD12Q96CX2 325 aaKnown RBP15.54■□□□□ 0.08
UPF3A-210ENST00000493727 PSMD1Q99460 953 aa15.54■□□□□ 0.08
UPF3A-210ENST00000493727 GRIPAP1Q4V328 841 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 PARP10Q53GL7 1025 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 CC2D2BQ6DHV5 1058 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 GIGYF2Q6Y7W6 1299 aaKnown RBP15.53■□□□□ 0.08
UPF3A-210ENST00000493727 TTLL7Q6ZT98 887 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 SAMD7Q7Z3H4 446 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 SYNE4Q8N205 404 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 TMEM134Q9H6X4 195 aa15.53■□□□□ 0.08
UPF3A-210ENST00000493727 EXOSC9Q06265 439 aaKnown RBP15.52■□□□□ 0.08
UPF3A-210ENST00000493727 DEFB115Q30KQ5 88 aa15.52■□□□□ 0.08
UPF3A-210ENST00000493727 PPP1R42Q7Z4L9 355 aa15.52■□□□□ 0.08
UPF3A-210ENST00000493727 TRMT2AQ8IZ69 625 aaKnown RBP15.52■□□□□ 0.08
UPF3A-210ENST00000493727 ZBTB3Q9H5J0 574 aa15.52■□□□□ 0.08
UPF3A-210ENST00000493727 ANKRD36CQ5JPF3 1778 aa15.52■□□□□ 0.07
UPF3A-210ENST00000493727 WDR33Q9C0J8 1336 aaKnown RBP15.51■□□□□ 0.07
UPF3A-210ENST00000493727 SOWAHBA6NEL2 793 aa15.51■□□□□ 0.07
UPF3A-210ENST00000493727 SWT1Q5T5J6 900 aaKnown RBP15.51■□□□□ 0.07
UPF3A-210ENST00000493727 NUTM1Q86Y26 1132 aa15.51■□□□□ 0.07
UPF3A-210ENST00000493727 NLRP7Q8WX94 980 aa15.51■□□□□ 0.07
UPF3A-210ENST00000493727 RPGRQ92834 1020 aaKnown RBP15.51■□□□□ 0.07
UPF3A-210ENST00000493727 DDX21Q9NR30 783 aaKnown RBP eCLIP15.51■□□□□ 0.07
UPF3A-210ENST00000493727 GPTP24298 496 aa15.5■□□□□ 0.07
UPF3A-210ENST00000493727 SCNN1DP51172 638 aa15.5■□□□□ 0.07
UPF3A-210ENST00000493727 THSD4Q6ZMP0 1018 aa15.5■□□□□ 0.07
UPF3A-210ENST00000493727 ZNF34Q8IZ26 560 aa15.5■□□□□ 0.07
UPF3A-210ENST00000493727 UBN2Q6ZU65 1347 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 EIF2S2P20042 333 aaKnown RBP15.49■□□□□ 0.07
UPF3A-210ENST00000493727 HOXA10P31260 410 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-210ENST00000493727 MAP2K1Q02750 393 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-210ENST00000493727 HSP90AB3PQ58FF7 597 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 SUSD4Q5VX71 490 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 SLC51AQ86UW1 340 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 JDP2Q8WYK2 163 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 ABHD8Q96I13 439 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 RBM17Q96I25 401 aaKnown RBP15.49■□□□□ 0.07
UPF3A-210ENST00000493727 CRAMP1Q96RY5 1269 aa15.49■□□□□ 0.07
UPF3A-210ENST00000493727 ELL2O00472 640 aaPredicted RBP15.48■□□□□ 0.07
UPF3A-210ENST00000493727 TRIM66O15016 1216 aa15.48■□□□□ 0.07
UPF3A-210ENST00000493727 NTSR2O95665 410 aa15.48■□□□□ 0.07
UPF3A-210ENST00000493727 BCAMP50895 628 aa15.48■□□□□ 0.07
UPF3A-210ENST00000493727 FMR1Q06787 632 aaKnown RBP eCLIP15.48■□□□□ 0.07
UPF3A-210ENST00000493727 LRCH3Q96II8 777 aa15.48■□□□□ 0.07
UPF3A-210ENST00000493727 TMX4Q9H1E5 349 aaPredicted RBP15.48■□□□□ 0.07
UPF3A-210ENST00000493727 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.48■□□□□ 0.07
UPF3A-210ENST00000493727 ABT1Q9ULW3 272 aaKnown RBP15.48■□□□□ 0.07
UPF3A-210ENST00000493727 TWISTNBQ3B726 338 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-210ENST00000493727 LRP10Q7Z4F1 713 aa15.47■□□□□ 0.07
UPF3A-210ENST00000493727 NLRP3Q96P20 1036 aa15.47■□□□□ 0.07
UPF3A-210ENST00000493727 CT47B1P0C2W7 299 aaPredicted RBP15.46■□□□□ 0.07
UPF3A-210ENST00000493727 EPS15P42566 896 aa15.46■□□□□ 0.07
UPF3A-210ENST00000493727 EIF6P56537 245 aaKnown RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms