RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 GAS8O95995 478 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 FAM107BQ9H098 131 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 MICALCLQ6ZW33 695 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 PDCL2Q8N4E4 241 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 TIGD1Q96MW7 591 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 MBIPQ9NS73 344 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 POLR3GO15318 223 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-212ENST00000491769 LARGE2Q8N3Y3 721 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 BACH2Q9BYV9 841 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 ZSWIM4Q9H7M6 989 aa14.9□□□□□ -0.02
COL6A3-212ENST00000491769 MAP7D1Q3KQU3 841 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 LRRC59Q96AG4 307 aaKnown RBP14.89□□□□□ -0.03
COL6A3-212ENST00000491769 SELENOOQ9BVL4 669 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 BMP15O95972 392 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 SLC8A3P57103 927 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 HS2ST1Q7LGA3 356 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 FBF1Q8TES7 1133 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 CHMP2AO43633 222 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 PTGS1P23219 599 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 GABPAQ06546 454 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 GOLGA1Q92805 767 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 NCKAP5LQ9HCH0 1330 aa14.89□□□□□ -0.03
COL6A3-212ENST00000491769 KRT5P13647 590 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 BIRC3Q13489 604 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 GPCPD1Q9NPB8 672 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 BTG4Q9NY30 223 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 NECAB1Q8N987 351 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 RTL9Q8NET4 1388 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 ATP2A1O14983 1001 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 FBLN1P23142 703 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 PRPHP41219 470 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 SMC1BQ8NDV3 1235 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 RNF216Q9NWF9 866 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-212ENST00000491769 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.88□□□□□ -0.03
COL6A3-212ENST00000491769 CDK13Q14004 1512 aaKnown RBP14.88□□□□□ -0.03
COL6A3-212ENST00000491769 DENND4BO75064 1496 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-212ENST00000491769 MYCLP12524 364 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-212ENST00000491769 MCM7P33993 719 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 IL15P40933 162 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-212ENST00000491769 DHX58Q96C10 678 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 M0QZ92 97 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 ATP2C2O75185 946 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 CCDC14Q49A88 953 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 PLIN2Q99541 437 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 NOS1P29475 1434 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 PTPDC1A2A3K4 754 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 H0YIN7 160 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 FNBP1Q96RU3 617 aa14.88□□□□□ -0.03
COL6A3-212ENST00000491769 SUPT6HQ7KZ85 1726 aaKnown RBP14.87□□□□□ -0.03
COL6A3-212ENST00000491769 PSMA7O14818 248 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 HSF2BPO75031 334 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 GSDMDP57764 484 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 MARCKSP29966 332 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-212ENST00000491769 CFAP58Q5T655 872 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 FCHSD1Q86WN1 690 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 NFATC2IPQ8NCF5 419 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 KIAA1524Q8TCG1 905 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 ARHGEF10LQ9HCE6 1279 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 USP25Q9UHP3 1055 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 CRCPO75575 148 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 SSFA2P28290 1259 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 CYLC1P35663 651 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-212ENST00000491769 MCMDC2Q4G0Z9 681 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 TEX11Q8IYF3 940 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 EHBP1Q8NDI1 1231 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 RHPN1Q8TCX5 695 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 GOLGA6L9A6NEM1 432 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 CCDC169A6NNP5 214 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 PARP1P09874 1014 aaKnown RBP14.87□□□□□ -0.03
COL6A3-212ENST00000491769 KRT2P35908 639 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 C16orf45Q96MC5 204 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-212ENST00000491769 TTC6Q86TZ1 520 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 KIFC2Q96AC6 838 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 PFDN4Q9NQP4 134 aa14.87□□□□□ -0.03
COL6A3-212ENST00000491769 POTEB2H3BUK9 544 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 TCEANC2Q96MN5 208 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 GRM8O00222 908 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 GNAT2P19087 354 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 AKAP4Q5JQC9 854 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 CCT6BQ92526 530 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 KIF22Q14807 665 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 PAG1Q9NWQ8 432 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 TPD52P55327 224 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-212ENST00000491769 CCDC77Q9BR77 488 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 KRT9P35527 623 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 GEN1Q17RS7 908 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 DCAF17Q5H9S7 520 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-212ENST00000491769 Q6ZUG5 572 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 EFCAB5A4FU69 1503 aa14.86□□□□□ -0.03
COL6A3-212ENST00000491769 DAPK3O43293 454 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 WDR44Q5JSH3 913 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 FNBP4Q8N3X1 1017 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-212ENST00000491769 SMCR8Q8TEV9 937 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-212ENST00000491769 ATP6V0A2Q9Y487 856 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 APBA3O96018 575 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 TRIM27P14373 513 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 CALML3P27482 149 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 CTAGE1Q96RT6 745 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 ABCC5O15440 1437 aa14.85□□□□□ -0.03
COL6A3-212ENST00000491769 UBASH3AP57075 661 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms